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X. tropicalis Gene: slc1a2 - ENSXETG00000007555 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000007555
Nameslc1a2
Descriptionsolute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:Xenbase;Acc:XB-GENE-1005169]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)19 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000029NF stage 6.5 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • UBERON:0000106zygote stage
  • UBERON:00072368 cell stage
  • XAO:1000026NF stage 16 (Xenopus)
  • UBERON:00072334 cell stage
  • UBERON:00072322 cell stage
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
2.26e3
  • 2.26e3
  • 3.04e3
  • 3.76e3
  • 3.81e3
  • 3.83e3
  • 4.82e3
  • 4.95e3
  • 5.94e3
  • 6.28e3
  • 6.78e3
  • 6.78e3
  • 7.58e3
  • 7.61e3
  • 8.74e3
  • 8.77e3
  • 1.00e4
  • 1.04e4
  • 1.06e4
  • 1.06e4
  • 1.07e4
  • 1.07e4
  • 1.13e4
  • 1.15e4
  • 1.15e4
  • 1.16e4
  • 1.18e4
  • 1.18e4
  • 1.19e4
  • 1.19e4
  • 1.20e4
  • 1.20e4
  • 1.22e4
  • 1.28e4
  • 1.34e4
  • 1.39e4
  • 1.47e4
  • 1.55e4
87.82
  • 87.82
  • 83.63
  • 79.77
  • 79.51
  • 79.41
  • 74.06
  • 73.39
  • 68.06
  • 66.23
  • 63.55
  • 63.53
  • 59.23
  • 59.06
  • 53.00
  • 52.81
  • 46.15
  • 44.24
  • 42.86
  • 42.83
  • 42.49
  • 42.44
  • 39.28
  • 38.09
  • 37.99
  • 37.79
  • 36.69
  • 36.53
  • 36.12
  • 36.07
  • 35.46
  • 35.28
  • 34.11
  • 31.20
  • 28.09
  • 25.01
  • 20.86
  • 16.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • XAO:1000051NF stage 39 (Xenopus)
4.65e3
  • 4.65e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001891midbrain
  • XAO:1000051NF stage 39 (Xenopus)
4.65e3
  • 4.65e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002240spinal cord
  • XAO:1000051NF stage 39 (Xenopus)
4.65e3
  • 4.65e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
4.92e3
  • 4.92e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0002028hindbrain
  • XAO:1000051NF stage 39 (Xenopus)
6.20e3
  • 6.20e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • XAO:1000022NF stage 12 (Xenopus)
8.99e3
  • 8.99e3
  • 1.28e4
51.65
  • 51.65
  • 31.13
AEIR
  • AEIR
  • AEIR
UBERON:0002546cranial placode
  • XAO:1000051NF stage 39 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
41.23
  • 41.23
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
1.39e4
  • 1.39e4
25.37
  • 25.37
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
18.48
  • 18.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: Xenbase
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: Xenbase
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria19 species19 genesCompare expression

Orthology information comes from OMA : ENSXETG00000007555.

Paralogs (same species)

Paralogy information comes from OMA : ENSXETG00000007555.

Cross-references

EnsemblENSXETG00000007555 (slc1a2)
XenbaseXB-GENE-1005169 (slc1a2)
EMBLAAMC01068918
Uniprot/SPTREMBLF6PZ25, F6PZ25_XENTR

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