X. tropicalis Gene: casq1 - ENSXETG00000008124 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000008124
Namecasq1
Descriptioncalsequestrin 1 (fast-twitch, skeletal muscle) [Source:Xenbase;Acc:XB-GENE-5753698]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)casq, pdib1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
36.0
  • 36.0
99.81050
  • 99.81050
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
1.24e3
  • 1.24e3
  • 1.98e3
  • 2.86e3
  • 7.17e3
  • 1.11e4
  • 1.34e4
  • 1.43e4
93.28641
  • 93.28641
  • 89.27836
  • 84.50135
  • 61.19291
  • 39.97293
  • 27.20187
  • 22.40919
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • XAO:1000079metamorphosing tadpole stage (Xenopus)
2.36e3
  • 2.36e3
87.20698
  • 87.20698
AEIR
  • AEIR
UBERON:0002101limb
  • XAO:1000079metamorphosing tadpole stage (Xenopus)
3.00e3
  • 3.00e3
83.75669
  • 83.75669
AEIR
  • AEIR
UBERON:0001474bone element
  • UBERON:0000113post-juvenile adult stage
3.17e3
  • 3.17e3
82.86497
  • 82.86497
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
6.04e3
  • 6.04e3
67.28204
  • 67.28204
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • XAO:1000080late tailbud stage (Xenopus)
  • UBERON:0000104life cycle
  • XAO:1000074NF stage 62 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000007tailbud stage (Xenopus)
6.78e3
  • 6.78e3
  • 8.69e3
  • 8.76e3
  • 8.79e3
  • 8.88e3
63.30070
  • 63.30070
  • 52.95181
  • 52.59083
  • 52.39621
  • 51.93400
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
7.95e3
  • 7.95e3
56.95722
  • 56.95722
AEIR
  • AEIR
UBERON:0000033head
  • XAO:1000007tailbud stage (Xenopus)
9.02e3
  • 9.02e3
51.16183
  • 51.16183
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • XAO:1000022NF stage 12 (Xenopus)
9.20e3
  • 9.20e3
  • 1.31e4
50.18029
  • 50.18029
  • 29.03628
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
43.92348
  • 43.92348
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
35.14364
  • 35.14364
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
30.55292
  • 30.55292
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
25.63413
  • 25.63413
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
1.50e4
  • 1.50e4
19.04927
  • 19.04927
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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