X. tropicalis Gene: FAM180A - ENSXETG00000010609 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000010609
NameFAM180A
Descriptionfamily with sequence similarity 180 member A [Source:HGNC Symbol;Acc:HGNC:33773]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)hwkm1940, unq1940
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
39.81
  • 39.81
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
1.25e4
  • 1.25e4
  • 1.26e4
  • 1.35e4
  • 1.42e4
  • 1.63e4
  • 1.64e4
  • 1.64e4
  • 1.66e4
  • 1.66e4
  • 1.66e4
  • 1.66e4
  • 1.68e4
  • 1.68e4
  • 1.70e4
32.83
  • 32.83
  • 32.09
  • 27.31
  • 23.39
  • 12.07
  • 11.68
  • 11.51
  • 10.92
  • 10.82
  • 10.65
  • 10.48
  • 9.81
  • 9.54
  • 8.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
30.11
  • 30.11
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
27.06
  • 27.06
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.48e4
  • 1.48e4
20.26
  • 20.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
19.87
  • 19.87
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.65e4
  • 1.65e4
11.14
  • 11.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSXETG00000010609.

Cross-references

EnsemblENSXETG00000010609 (FAM180A)
HGNCHGNC:33773 (FAM180A)
EMBLAAMC01119037
Uniprot/SPTREMBLF6VH19, F6VH19_XENTR

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