X. tropicalis Gene: foxd3 - ENSXETG00000010836 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000010836
Namefoxd3
Descriptionforkhead box D3 [Source:Xenbase;Acc:XB-GENE-487289]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)fkh6, genesis, hfh2, xfd-6, xfoxd3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
  • XAO:1000022NF stage 12 (Xenopus)
3.73e3
  • 3.73e3
  • 5.57e3
  • 8.93e3
79.92226
  • 79.92226
  • 70.02136
  • 51.97181
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:00072368 cell stage
  • UBERON:00072334 cell stage
3.87e3
  • 3.87e3
  • 4.04e3
  • 4.12e3
  • 4.92e3
  • 5.53e3
  • 5.71e3
  • 5.72e3
  • 5.92e3
  • 6.18e3
  • 6.23e3
  • 6.45e3
  • 6.80e3
  • 7.11e3
  • 7.26e3
  • 7.31e3
  • 7.65e3
  • 7.69e3
  • 8.24e3
  • 8.31e3
  • 8.32e3
  • 8.54e3
  • 8.68e3
  • 8.71e3
  • 9.15e3
  • 9.18e3
  • 9.42e3
  • 9.45e3
  • 9.84e3
  • 9.85e3
  • 1.00e4
  • 1.01e4
  • 1.09e4
  • 1.12e4
  • 1.13e4
  • 1.27e4
  • 1.32e4
  • 1.32e4
  • 1.33e4
  • 1.56e4
79.16463
  • 79.16463
  • 78.28321
  • 77.83300
  • 73.52456
  • 70.23672
  • 69.26884
  • 69.21639
  • 68.13795
  • 66.73476
  • 66.48604
  • 65.31457
  • 63.42740
  • 61.77694
  • 60.93291
  • 60.66358
  • 58.85102
  • 58.63733
  • 55.66649
  • 55.27907
  • 55.23775
  • 54.04853
  • 53.32808
  • 53.14467
  • 50.79712
  • 50.59278
  • 49.35170
  • 49.18362
  • 47.04272
  • 46.98537
  • 46.15145
  • 45.90370
  • 41.39985
  • 40.00538
  • 39.43676
  • 31.87470
  • 29.10895
  • 29.07425
  • 28.68871
  • 16.18352
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002342neural crest
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
4.65e3
  • 4.65e3
  • 9.30e3
75.00269
  • 75.00269
  • 49.99731
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
8.00e3
  • 8.00e3
56.97531
  • 56.97531
AEIR
  • AEIR
UBERON:0000033head
  • XAO:1000049NF stage 35 and 36 (Xenopus)
9.29e3
  • 9.29e3
50.00269
  • 50.00269
AEIR
  • AEIR
UBERON:0000100blastopore
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
50.00269
  • 50.00269
AEIR
  • AEIR
UBERON:0001016nervous system
  • XAO:1000037NF stage 21 (Xenopus)
9.29e3
  • 9.29e3
50.00269
  • 50.00269
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • XAO:1000037NF stage 21 (Xenopus)
9.29e3
  • 9.29e3
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:0000926mesoderm
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:0000955brain
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • UBERON:0000113post-juvenile adult stage
9.29e3
  • 9.29e3
  • 9.30e3
  • 1.32e4
50.00000
  • 50.00000
  • 49.99731
  • 29.11745
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003062primitive knot
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:0002329somite
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
9.30e3
  • 9.30e3
  • 9.30e3
49.99731
  • 49.99731
  • 49.99731
AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • XAO:1000049NF stage 35 and 36 (Xenopus)
9.30e3
  • 9.30e3
49.99731
  • 49.99731
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
9.73e3
  • 9.73e3
  • 1.05e4
47.63808
  • 47.63808
  • 43.43896
AEIR
  • AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
38.49459
  • 38.49459
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
32.94636
  • 32.94636
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
25.05283
  • 25.05283
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
14.46312
  • 14.46312
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC088566, CR760163
EnsemblENSXETG00000010836 (foxd3)
Uniprot/SWISSPROTFOXD3_XENTR, Q5M7L9
XenbaseXB-GENE-487289 (foxd3)

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