X. tropicalis Gene: sptlc2 - ENSXETG00000011085 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000011085
Namesptlc2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:Xenbase;Acc:XB-GENE-946143]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)27 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
3.87e3
  • 3.87e3
79.20
  • 79.20
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000029NF stage 6.5 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • UBERON:00072334 cell stage
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • UBERON:00072322 cell stage
  • XAO:1000030NF stage 10.25 (Xenopus)
  • UBERON:0000106zygote stage
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
3.90e3
  • 3.90e3
  • 4.03e3
  • 4.22e3
  • 4.25e3
  • 4.35e3
  • 4.35e3
  • 4.35e3
  • 4.39e3
  • 4.42e3
  • 4.46e3
  • 4.47e3
  • 4.48e3
  • 4.57e3
  • 4.59e3
  • 4.63e3
  • 4.64e3
  • 4.70e3
  • 4.73e3
  • 4.78e3
  • 4.79e3
  • 4.81e3
  • 4.84e3
  • 4.88e3
  • 4.89e3
  • 4.93e3
  • 4.95e3
  • 4.95e3
  • 4.96e3
  • 4.98e3
  • 5.06e3
  • 5.11e3
  • 5.13e3
  • 5.17e3
  • 5.19e3
  • 5.31e3
  • 5.43e3
  • 5.46e3
  • 5.55e3
  • 5.85e3
  • 5.92e3
  • 6.09e3
79.02
  • 79.02
  • 78.30
  • 77.31
  • 77.15
  • 76.63
  • 76.62
  • 76.59
  • 76.38
  • 76.21
  • 76.00
  • 75.97
  • 75.88
  • 75.44
  • 75.33
  • 75.10
  • 75.04
  • 74.74
  • 74.56
  • 74.27
  • 74.22
  • 74.12
  • 73.95
  • 73.78
  • 73.68
  • 73.49
  • 73.40
  • 73.39
  • 73.30
  • 73.22
  • 72.76
  • 72.50
  • 72.38
  • 72.21
  • 72.08
  • 71.42
  • 70.79
  • 70.65
  • 70.13
  • 68.55
  • 68.13
  • 67.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
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  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.34e3
  • 4.34e3
76.67
  • 76.67
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
5.03e3
  • 5.03e3
  • 5.58e3
72.97
  • 72.97
  • 69.97
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
5.62e3
  • 5.62e3
  • 5.87e3
  • 6.38e3
69.75
  • 69.75
  • 68.41
  • 65.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
7.28e3
  • 7.28e3
60.83
  • 60.83
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
7.66e3
  • 7.66e3
58.82
  • 58.82
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
7.72e3
  • 7.72e3
58.46
  • 58.46
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
7.78e3
  • 7.78e3
58.13
  • 58.13
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
8.09e3
  • 8.09e3
56.46
  • 56.46
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.13e3
  • 9.13e3
50.90
  • 50.90
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000113post-juvenile adult stage
9.15e3
  • 9.15e3
50.77
  • 50.77
AEIR
  • AEIR
UBERON:0000033head
  • XAO:1000007tailbud stage (Xenopus)
9.20e3
  • 9.20e3
50.48
  • 50.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSXETG00000011085.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSXETG00000011085.

Cross-references

EnsemblENSXETG00000011085 (sptlc2)
XenbaseXB-GENE-946143 (sptlc2)
EMBLAAMC01085582, AAMC01085583
Uniprot/SPTREMBLF6WM78, F6WM78_XENTR

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