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X. tropicalis Gene: cdh18 - ENSXETG00000012238 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000012238
Namecdh18
Descriptioncadherin 18, type 2 [Source:Xenbase;Acc:XB-GENE-982900]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)19 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
5.20e3
  • 5.20e3
72.01
  • 72.01
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
33.13
  • 33.13
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
30.23
  • 30.23
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
1.42e4
  • 1.42e4
  • 1.45e4
  • 1.47e4
  • 1.48e4
  • 1.48e4
  • 1.50e4
  • 1.52e4
  • 1.53e4
  • 1.54e4
  • 1.55e4
  • 1.56e4
  • 1.58e4
  • 1.66e4
23.63
  • 23.63
  • 21.98
  • 20.96
  • 20.52
  • 20.48
  • 19.24
  • 18.33
  • 17.71
  • 16.96
  • 16.65
  • 15.88
  • 14.81
  • 10.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.65e4
  • 1.65e4
11.10
  • 11.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Paralogy information comes from OMA : ENSXETG00000012238.

Cross-references

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