X. tropicalis Gene: vsx1 - ENSXETG00000012786 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000012786
Namevsx1
Descriptionvisual system homeobox 1 [Source:Xenbase;Acc:XB-GENE-853166]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
3.61e3
  • 3.61e3
  • 3.75e3
  • 3.93e3
  • 4.05e3
  • 4.06e3
  • 4.10e3
  • 4.30e3
  • 4.54e3
  • 4.56e3
  • 4.81e3
  • 4.85e3
  • 4.94e3
  • 4.95e3
  • 5.12e3
  • 5.55e3
  • 5.69e3
  • 6.20e3
  • 6.26e3
  • 6.40e3
  • 6.72e3
  • 6.77e3
  • 6.84e3
  • 6.87e3
  • 7.88e3
  • 9.61e3
  • 1.03e4
  • 1.11e4
  • 1.27e4
  • 1.27e4
  • 1.30e4
  • 1.30e4
  • 1.54e4
80.57
  • 80.57
  • 79.83
  • 78.88
  • 78.19
  • 78.17
  • 77.96
  • 76.89
  • 75.57
  • 75.48
  • 74.15
  • 73.92
  • 73.41
  • 73.38
  • 72.47
  • 70.14
  • 69.41
  • 66.64
  • 66.35
  • 65.59
  • 63.84
  • 63.60
  • 63.21
  • 63.06
  • 57.58
  • 48.32
  • 44.47
  • 40.48
  • 31.88
  • 31.87
  • 30.11
  • 30.03
  • 17.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
5.06e3
  • 5.06e3
72.80
  • 72.80
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
6.20e3
  • 6.20e3
  • 9.29e3
  • 9.30e3
  • 9.30e3
66.67
  • 66.67
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003056pre-chordal neural plate
  • XAO:1000025NF stage 15 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • XAO:1000025NF stage 15 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003071eye primordium
  • XAO:1000025NF stage 15 (Xenopus)
9.30e3
  • 9.30e3
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: Xenbase
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: Xenbase
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSXETG00000012786 (vsx1)
XenbaseXB-GENE-853166 (vsx1)
EMBLAAMC01070512, AAMC01070513
Uniprot/SPTREMBLF6WMR2, F6WMR2_XENTR

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