X. tropicalis Gene: cxcr4 - ENSXETG00000014890 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000014890
Namecxcr4
Descriptionchemokine (C-X-C motif) receptor 4 [Source:Xenbase;Acc:XB-GENE-489917]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)cd184, cxc-r4, cxcr-4, d2s201e, fb22, hm89, hsy3rr, lap3, lcr1, lestr, npy3r, npyr, npyrl, npyy3r, whim, xcxcr4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • UBERON:00072334 cell stage
  • UBERON:00072322 cell stage
  • UBERON:00072368 cell stage
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
1.14e3
  • 1.14e3
  • 1.24e3
  • 1.36e3
  • 2.53e3
  • 3.08e3
  • 3.56e3
  • 3.88e3
  • 7.49e3
  • 7.77e3
  • 8.11e3
  • 8.40e3
  • 1.05e4
93.84991
  • 93.84991
  • 93.31049
  • 92.66919
  • 86.33010
  • 83.31733
  • 80.72401
  • 79.00920
  • 59.46400
  • 57.96427
  • 56.09637
  • 54.52084
  • 43.19469
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
  • XAO:1000022NF stage 12 (Xenopus)
1.90e3
  • 1.90e3
  • 2.59e3
  • 2.85e3
89.70780
  • 89.70780
  • 85.98441
  • 84.55333
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
4.45e3
  • 4.45e3
75.90593
  • 75.90593
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
4.59e3
  • 4.59e3
  • 7.13e3
75.13032
  • 75.13032
  • 61.41310
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
4.65e3
  • 4.65e3
74.85181
  • 74.85181
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.63e3
  • 5.63e3
69.52934
  • 69.52934
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • XAO:1000080late tailbud stage (Xenopus)
  • UBERON:0000110neurula stage
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
  • XAO:1000007tailbud stage (Xenopus)
  • UBERON:0000106zygote stage
8.51e3
  • 8.51e3
  • 8.53e3
  • 8.59e3
  • 8.72e3
  • 9.14e3
  • 9.29e3
53.94461
  • 53.94461
  • 53.82290
  • 53.48917
  • 52.78863
  • 50.52014
  • 49.73470
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • XAO:1000091climax stage (Xenopus)
9.07e3
  • 9.07e3
50.91987
  • 50.91987
AEIR
  • AEIR
UBERON:0003101male organism
  • UBERON:0000113post-juvenile adult stage
9.25e3
  • 9.25e3
49.93232
  • 49.93232
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
42.34522
  • 42.34522
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
41.57017
  • 41.57017
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
40.56972
  • 40.56972
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.15e4
  • 1.15e4
37.94378
  • 37.94378
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
34.63996
  • 34.63996
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
20.45020
  • 20.45020
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCR942369
EnsemblENSXETG00000014890 (cxcr4)
Uniprot/SWISSPROTCXCR4_XENTR, Q07FZ4
XenbaseXB-GENE-489917 (cxcr4)

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