X. tropicalis Gene: otx2 - ENSXETG00000015687 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000015687
Nameotx2
Descriptionorthodenticle homeobox 2 [Source:Xenbase;Acc:XB-GENE-485220]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)a4ii69, mcops5, otx-2, otxa, xotx-2, xotx2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • UBERON:00072368 cell stage
  • UBERON:00072322 cell stage
1.29e3
  • 1.29e3
  • 1.31e3
  • 1.41e3
  • 1.43e3
  • 1.50e3
  • 1.50e3
  • 1.52e3
  • 1.74e3
  • 1.79e3
  • 1.94e3
  • 2.04e3
  • 2.28e3
  • 2.28e3
  • 2.32e3
  • 2.32e3
  • 2.47e3
  • 2.49e3
  • 2.50e3
  • 2.56e3
  • 2.62e3
  • 2.66e3
  • 2.89e3
  • 2.97e3
  • 3.27e3
  • 3.34e3
  • 4.02e3
  • 4.67e3
  • 4.94e3
  • 5.76e3
  • 6.07e3
  • 6.45e3
  • 6.54e3
  • 7.19e3
  • 1.20e4
  • 1.26e4
  • 1.33e4
  • 1.44e4
  • 1.52e4
93.09
  • 93.09
  • 92.96
  • 92.40
  • 92.33
  • 91.94
  • 91.93
  • 91.83
  • 90.63
  • 90.36
  • 89.55
  • 89.03
  • 87.75
  • 87.72
  • 87.52
  • 87.52
  • 86.72
  • 86.62
  • 86.54
  • 86.25
  • 85.90
  • 85.68
  • 84.45
  • 84.03
  • 82.40
  • 82.03
  • 78.37
  • 74.88
  • 73.45
  • 69.00
  • 67.36
  • 65.29
  • 64.84
  • 61.33
  • 35.56
  • 32.24
  • 28.25
  • 22.78
  • 17.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • UBERON:0000109gastrula stage
1.47e3
  • 1.47e3
  • 2.04e3
  • 2.60e3
92.11
  • 92.11
  • 89.01
  • 86.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
4.65e3
  • 4.65e3
  • 9.29e3
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • XAO:1000044NF stage 28 (Xenopus)
  • UBERON:0000113post-juvenile adult stage
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
6.20e3
  • 6.20e3
  • 7.73e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
66.67
  • 66.67
  • 58.41
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
6.20e3
  • 6.20e3
  • 9.29e3
  • 9.29e3
66.67
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
6.97e3
  • 6.97e3
  • 9.29e3
  • 9.29e3
  • 9.30e3
  • 9.30e3
62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
8.43e3
  • 8.43e3
  • 9.29e3
  • 9.29e3
  • 9.30e3
54.66
  • 54.66
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
8.74e3
  • 8.74e3
  • 1.16e4
52.96
  • 52.96
  • 37.86
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • XAO:1000025NF stage 15 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001891midbrain
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.30e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002346neurectoderm
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003056pre-chordal neural plate
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003080anterior neural tube
  • XAO:1000027NF stage 17 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005093embryonic cement gland
  • XAO:1000052NF stage 40 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000032stomodeal-hypophyseal primordium (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000049cement gland primordium (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003073lens placode
  • XAO:1000044NF stage 28 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009122adenohypophyseal placode
  • XAO:1000036NF stage 20 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
28.06
  • 28.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC135884, CR761863
EnsemblENSXETG00000015687 (otx2)
Uniprot/SWISSPROTOTX2_XENTR, Q28FN6
XenbaseXB-GENE-485220 (otx2)

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