X. tropicalis Gene: pdss1 - ENSXETG00000018798 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000018798
Namepdss1
Descriptionprenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:Xenbase;Acc:XB-GENE-982903]
OrganismXenopus tropicalis (western clawed frog)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.72e3
  • 1.72e3
90.74622
  • 90.74622
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
2.25e3
  • 2.25e3
  • 3.03e3
87.91091
  • 87.91091
  • 83.68844
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
  • XAO:1000022NF stage 12 (Xenopus)
2.65e3
  • 2.65e3
  • 4.22e3
  • 5.00e3
85.77344
  • 85.77344
  • 77.28455
  • 73.10486
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000029NF stage 6.5 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • UBERON:00072334 cell stage
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • UBERON:00072322 cell stage
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • UBERON:0000106zygote stage
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
3.04e3
  • 3.04e3
  • 3.20e3
  • 3.27e3
  • 3.28e3
  • 3.42e3
  • 3.46e3
  • 3.57e3
  • 3.61e3
  • 3.66e3
  • 3.67e3
  • 3.68e3
  • 3.69e3
  • 3.69e3
  • 3.69e3
  • 3.81e3
  • 3.89e3
  • 3.89e3
  • 3.90e3
  • 4.03e3
  • 4.08e3
  • 4.21e3
  • 4.22e3
  • 4.41e3
  • 4.46e3
  • 4.49e3
  • 4.63e3
  • 4.74e3
  • 4.95e3
  • 5.09e3
  • 5.27e3
  • 5.33e3
  • 5.74e3
  • 5.74e3
  • 5.77e3
  • 5.83e3
  • 5.97e3
  • 5.98e3
  • 6.01e3
  • 6.03e3
  • 6.09e3
  • 6.24e3
83.63598
  • 83.63598
  • 82.78221
  • 82.40297
  • 82.33712
  • 81.60010
  • 81.41481
  • 80.79297
  • 80.59316
  • 80.29235
  • 80.25389
  • 80.19874
  • 80.16146
  • 80.15054
  • 80.12896
  • 79.53408
  • 79.09980
  • 79.05558
  • 79.00829
  • 78.33653
  • 78.07753
  • 77.33201
  • 77.29429
  • 76.26917
  • 76.01549
  • 75.86464
  • 75.09550
  • 74.49492
  • 73.36031
  • 72.63808
  • 71.63916
  • 71.32318
  • 69.14639
  • 69.12385
  • 68.96234
  • 68.62641
  • 67.86173
  • 67.85840
  • 67.67208
  • 67.55437
  • 67.26712
  • 66.45704
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
3.30e3
  • 3.30e3
82.22645
  • 82.22645
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
3.77e3
  • 3.77e3
79.71060
  • 79.71060
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.44e3
  • 4.44e3
76.13773
  • 76.13773
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
4.82e3
  • 4.82e3
74.05337
  • 74.05337
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
8.03e3
  • 8.03e3
56.81299
  • 56.81299
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
8.49e3
  • 8.49e3
54.31775
  • 54.31775
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
9.46e3
  • 9.46e3
49.10400
  • 49.10400
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLAAMC01019736
EnsemblENSXETG00000018798 (pdss1)
Uniprot/SPTREMBLF6XXT7, F6XXT7_XENTR
XenbaseXB-GENE-982903 (pdss1)

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