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X. tropicalis Gene: rrnad1 - ENSXETG00000019930 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000019930
Namerrnad1
Descriptionribosomal RNA adenine dimethylase domain containing 1 [Source:Xenbase;Acc:XB-GENE-5845705]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)c1orf66, cgi-41
Orthologs(s)26 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000029NF stage 6.5 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
5.50e3
  • 5.50e3
  • 6.78e3
  • 6.84e3
  • 7.28e3
  • 7.90e3
  • 8.05e3
  • 9.29e3
  • 9.81e3
  • 1.15e4
  • 1.19e4
  • 1.20e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
  • 1.23e4
  • 1.24e4
  • 1.24e4
  • 1.26e4
  • 1.27e4
  • 1.27e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
  • 1.28e4
  • 1.30e4
  • 1.31e4
  • 1.31e4
  • 1.31e4
  • 1.31e4
  • 1.31e4
  • 1.32e4
  • 1.32e4
  • 1.32e4
  • 1.32e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
  • 1.35e4
  • 1.36e4
70.40
  • 70.40
  • 63.51
  • 63.19
  • 60.83
  • 57.49
  • 56.67
  • 50.02
  • 47.21
  • 37.95
  • 35.90
  • 35.26
  • 35.22
  • 34.54
  • 34.50
  • 34.28
  • 34.18
  • 33.94
  • 33.43
  • 33.05
  • 32.40
  • 31.94
  • 31.83
  • 31.52
  • 31.45
  • 31.17
  • 30.89
  • 30.08
  • 29.60
  • 29.55
  • 29.48
  • 29.45
  • 29.26
  • 29.22
  • 29.02
  • 28.87
  • 28.84
  • 28.70
  • 28.52
  • 28.23
  • 27.45
  • 26.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
5.84e3
  • 5.84e3
68.58
  • 68.58
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
6.69e3
  • 6.69e3
64.03
  • 64.03
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
7.67e3
  • 7.67e3
58.72
  • 58.72
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
8.02e3
  • 8.02e3
  • 9.77e3
56.88
  • 56.88
  • 47.45
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
8.36e3
  • 8.36e3
55.00
  • 55.00
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.37e3
  • 9.37e3
49.60
  • 49.60
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
9.89e3
  • 9.89e3
46.81
  • 46.81
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
1.05e4
  • 1.05e4
  • 1.09e4
  • 1.31e4
43.25
  • 43.25
  • 41.42
  • 29.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
39.61
  • 39.61
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
38.47
  • 38.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSXETG00000019930.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Xenopus1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSXETG00000019930.

Cross-references

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