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X. tropicalis Gene: col21a1 - ENSXETG00000022756 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000022756
Namecol21a1
Descriptioncollagen, type XXI, alpha 1 [Source:Xenbase;Acc:XB-GENE-952329]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
35.17
  • 35.17
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
33.33
  • 33.33
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
25.41
  • 25.41
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
23.42
  • 23.42
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
1.56e4
  • 1.56e4
  • 1.61e4
  • 1.63e4
16.08
  • 16.08
  • 13.63
  • 12.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.64e4
  • 1.64e4
12.02
  • 12.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSXETG00000022756.

Cross-references

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