X. tropicalis Gene: - ENSXETG00000025579 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000025579
Name-
Descriptionblue-sensitive opsin-like [Source:Xenbase;Acc:XB-GENE-5817985]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)2 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
13.13
  • 13.13
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.67e4
  • 1.67e4
10.15
  • 10.15
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
1.67e4
  • 1.67e4
  • 1.70e4
  • 1.71e4
9.94
  • 9.94
  • 8.78
  • 8.03
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSXETG00000025579.

Cross-references

EnsemblENSXETG00000025579
XenbaseXB-GENE-5817985 (LOC100485989)
EMBLAAMC01067682
Uniprot/SPTREMBLF6WNN1, F6WNN1_XENTR

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