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X. tropicalis Gene: - ENSXETG00000026012 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000026012
Name-
DescriptionPutative ortholog of beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-) (Beta-carotene dioxygenase 2) (B-diox-II), 1 of 1 [Source:Xenbase;Acc:XB-GENE-962365]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)21 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
39.64
  • 39.64
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
1.26e4
  • 1.26e4
  • 1.28e4
  • 1.30e4
  • 1.30e4
  • 1.31e4
  • 1.33e4
  • 1.33e4
  • 1.35e4
  • 1.39e4
  • 1.39e4
  • 1.40e4
  • 1.41e4
  • 1.43e4
  • 1.44e4
  • 1.44e4
  • 1.44e4
  • 1.45e4
  • 1.46e4
  • 1.46e4
  • 1.46e4
  • 1.47e4
  • 1.47e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
  • 1.51e4
32.45
  • 32.45
  • 30.95
  • 30.05
  • 30.00
  • 29.51
  • 28.72
  • 28.48
  • 27.26
  • 25.34
  • 25.22
  • 24.66
  • 23.89
  • 23.32
  • 22.59
  • 22.42
  • 22.36
  • 22.23
  • 21.49
  • 21.35
  • 21.33
  • 20.98
  • 20.66
  • 20.49
  • 20.45
  • 20.05
  • 18.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
30.16
  • 30.16
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
29.79
  • 29.79
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
22.67
  • 22.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
20.04
  • 20.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
18.27
  • 18.27
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.52e4
  • 1.52e4
18.22
  • 18.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria19 species21 genesCompare expression

Orthology information comes from OMA : ENSXETG00000026012.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda1 geneCompare expression
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSXETG00000026012.

Cross-references

EnsemblENSXETG00000026012
XenbaseXB-GENE-962365 (LOC100487224)
EMBLAAMC01128848
Uniprot/SPTREMBLF6VPY8, F6VPY8_XENTR

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