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X. tropicalis Gene: otop3 - ENSXETG00000027068 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000027068
Nameotop3
Descriptionotopetrin 3 [Source:Xenbase;Acc:XB-GENE-993899]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)nlo
Orthologs(s)16 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.26e3
  • 4.26e3
77.11
  • 77.11
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000106zygote stage
  • XAO:1000044NF stage 28 (Xenopus)
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000029NF stage 6.5 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
5.72e3
  • 5.72e3
  • 6.53e3
  • 6.66e3
  • 6.79e3
  • 6.99e3
  • 7.06e3
  • 7.07e3
  • 7.15e3
  • 7.25e3
  • 7.36e3
  • 7.36e3
  • 7.42e3
  • 7.44e3
  • 7.57e3
  • 7.61e3
  • 7.72e3
  • 7.78e3
  • 7.82e3
  • 8.06e3
  • 8.12e3
  • 8.16e3
  • 8.39e3
  • 8.62e3
  • 8.73e3
  • 8.91e3
  • 8.95e3
  • 9.18e3
  • 9.21e3
  • 9.26e3
  • 9.33e3
  • 9.53e3
  • 9.55e3
  • 9.73e3
  • 9.74e3
  • 9.87e3
  • 9.88e3
  • 9.94e3
  • 1.01e4
  • 1.02e4
  • 1.10e4
  • 1.13e4
69.22
  • 69.22
  • 64.87
  • 64.17
  • 63.46
  • 62.42
  • 62.03
  • 61.98
  • 61.55
  • 61.00
  • 60.43
  • 60.43
  • 60.08
  • 59.98
  • 59.28
  • 59.05
  • 58.48
  • 58.15
  • 57.94
  • 56.66
  • 56.31
  • 56.12
  • 54.86
  • 53.63
  • 53.04
  • 52.07
  • 51.87
  • 50.62
  • 50.46
  • 50.20
  • 49.81
  • 48.73
  • 48.62
  • 47.66
  • 47.60
  • 46.93
  • 46.84
  • 46.53
  • 45.52
  • 44.96
  • 40.68
  • 39.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
6.64e3
  • 6.64e3
  • 7.28e3
  • 8.51e3
64.28
  • 64.28
  • 60.81
  • 54.23
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
8.10e3
  • 8.10e3
56.41
  • 56.41
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
8.38e3
  • 8.38e3
  • 8.43e3
54.90
  • 54.90
  • 54.65
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000007tailbud stage (Xenopus)
9.06e3
  • 9.06e3
  • 9.16e3
  • 9.33e3
51.24
  • 51.24
  • 50.70
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
33.99
  • 33.99
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
26.84
  • 26.84
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
25.35
  • 25.35
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
21.93
  • 21.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Paralogy information comes from OMA : ENSXETG00000027068.

Cross-references

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