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X. tropicalis Gene: XB-GENE-5761426 - ENSXETG00000027273 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000027273
NameXB-GENE-5761426
DescriptionMGC107876 protein [Source:Xenbase;Acc:XB-GENE-5761426]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)44 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
258
  • 258
98.62
  • 98.62
AEIR
  • AEIR
UBERON:0003101male organism
  • UBERON:0000113post-juvenile adult stage
7.24e3
  • 7.24e3
61.06
  • 61.06
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000113post-juvenile adult stage
7.80e3
  • 7.80e3
58.06
  • 58.06
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
9.20e3
  • 9.20e3
  • 9.97e3
  • 1.12e4
  • 1.15e4
  • 1.18e4
  • 1.26e4
  • 1.32e4
  • 1.40e4
  • 1.40e4
  • 1.49e4
  • 1.49e4
  • 1.53e4
  • 1.54e4
  • 1.55e4
  • 1.55e4
  • 1.55e4
  • 1.59e4
50.53
  • 50.53
  • 46.39
  • 39.76
  • 38.16
  • 36.65
  • 32.16
  • 28.96
  • 24.69
  • 24.58
  • 19.78
  • 19.61
  • 17.77
  • 17.18
  • 16.79
  • 16.76
  • 16.69
  • 14.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
39.71
  • 39.71
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
35.17
  • 35.17
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
24.83
  • 24.83
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
20.10
  • 20.10
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.70e4
  • 1.70e4
8.62
  • 8.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.71e4
  • 1.71e4
8.08
  • 8.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda17 species43 genesCompare expression
Euteleostomi18 species44 genesCompare expression

Orthology information comes from OMA : ENSXETG00000027273.

Paralogs (same species)

Cross-references

EnsemblENSXETG00000027273 (XB-GENE-5761426)
XenbaseXB-GENE-5761426
EMBLAAMC01138206
Uniprot/SPTREMBLF6TTT1, F6TTT1_XENTR

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