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X. tropicalis Gene: cox6a2 - ENSXETG00000027544 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000027544
Namecox6a2
Descriptioncytochrome c oxidase subunit VIa polypeptide 2 [Source:Xenbase;Acc:XB-GENE-5784173]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)mgc88918
Orthologs(s)21 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
127
  • 127
99.32
  • 99.32
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
221
  • 221
98.82
  • 98.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
28.67
  • 28.67
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
25.24
  • 25.24
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
1.56e4
  • 1.56e4
  • 1.62e4
  • 1.62e4
  • 1.67e4
  • 1.68e4
  • 1.70e4
  • 1.70e4
  • 1.74e4
  • 1.75e4
15.86
  • 15.86
  • 13.02
  • 12.83
  • 10.42
  • 9.36
  • 8.76
  • 8.56
  • 6.34
  • 5.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
1.58e4
  • 1.58e4
15.16
  • 15.16
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.65e4
  • 1.65e4
11.09
  • 11.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda1 geneCompare expression

Paralogy information comes from OMA : ENSXETG00000027544.

Cross-references

EnsemblENSXETG00000027544 (cox6a2)
XenbaseXB-GENE-5784173 (cox6a2)
EMBLAAMC01117871, BC075281
Uniprot/SPTREMBLQ6DJA1, Q6DJA1_XENTR

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