X. tropicalis Gene: COL10A1 - ENSXETG00000033031 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000033031
NameCOL10A1
Descriptioncollagen, type X, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2185]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
1.20e4
  • 1.20e4
  • 1.62e4
  • 1.65e4
  • 1.66e4
  • 1.67e4
35.71
  • 35.71
  • 12.84
  • 11.02
  • 10.74
  • 10.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
1.32e4
  • 1.32e4
  • 1.64e4
28.84
  • 28.84
  • 11.58
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
25.88
  • 25.88
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
22.98
  • 22.98
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
1.49e4
  • 1.49e4
19.76
  • 19.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSXETG00000033031.

Cross-references

EnsemblENSXETG00000033031 (COL10A1)
HGNCHGNC:2185 (COL10A1)
EMBLAAMC01079345
Uniprot/SPTREMBLF6QGL7, F6QGL7_XENTR

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