D. melanogaster Gene: rdgB - FBgn0003218 - Drosophila melanogaster (fruit fly)

General information

Ensembl IDFBgn0003218
NamerdgB
Descriptionretinal degeneration B [Source:FlyBase gene name;Acc:FBgn0003218]
OrganismDrosophila melanogaster (fruit fly)
Synonym(s)a4v4e8, cg11111, cg11111-pa, cg11111-pb, cg11111-ra, cg11111-rb, dmel\cg11111, drdgb, drdgbalpha, hypof, o02434, ota1, pitp, q6np01, q961r2, q9vy88, rdgb, rdgbalpha, receptor degeneration b, receptor-degeneration-ii, x36
Orthologs(s)37 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000104life cycle
  • FBdv:00007076day 1 of adulthood (Drosophila)
  • FBdv:00007078day 3 of adulthood (Drosophila)
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • FBdv:00007085day 10 of adulthood (Drosophila)
  • FBdv:00007095day 20 of adulthood (Drosophila)
  • FBdv:00007083day 8 of adulthood (Drosophila)
  • UBERON:0000066fully formed stage
  • FBdv:00005364pharate adult stage P13 (Drosophila)
787
  • 787
  • 1.51e3
  • 1.55e3
  • 1.64e3
  • 2.08e3
  • 2.10e3
  • 2.30e3
  • 2.56e3
  • 3.47e3
95.45
  • 95.45
  • 91.23
  • 91.01
  • 90.51
  • 87.96
  • 87.80
  • 86.69
  • 85.18
  • 79.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
85.91
  • 85.91
AEIR
  • AEIR
FBbt:00005725adult Malpighian tubule (Drosophila)
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
81.57
  • 81.57
AEIR
  • AEIR
FBbt:00003133crop (Drosophila)
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
80.82
  • 80.82
AEIR
  • AEIR
UBERON:0001017central nervous system
  • FBdv:00005355pharate adult stage P8 (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
3.52e3
  • 3.52e3
  • 4.05e3
79.61
  • 79.61
  • 76.51
AEIR
  • AEIR
  • AEIR
UBERON:0003143pupa
  • FBdv:00005366pharate adult stage P15 (Drosophila)
  • FBdv:00005356pharate adult stage P9 (Drosophila)
  • FBdv:00005355pharate adult stage P8 (Drosophila)
  • UBERON:0000070pupal stage
  • FBdv:00005348prepupal stage P4(ii) (Drosophila)
  • FBdv:00005353pupal stage P6 (Drosophila)
3.67e3
  • 3.67e3
  • 4.58e3
  • 4.91e3
  • 5.27e3
  • 5.31e3
  • 5.71e3
78.75
  • 78.75
  • 73.44
  • 71.52
  • 69.44
  • 69.25
  • 66.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003917arthropod fat body
  • UBERON:0000066fully formed stage
  • FBdv:00005355pharate adult stage P8 (Drosophila)
  • FBdv:00005343prepupal stage P1 (Drosophila)
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
  • UBERON:0004730instar larval stage
  • UBERON:0000069larval stage
3.84e3
  • 3.84e3
  • 4.32e3
  • 4.89e3
  • 7.91e3
  • 8.48e3
  • 9.05e3
  • 9.43e3
77.77
  • 77.77
  • 74.94
  • 71.67
  • 54.17
  • 50.84
  • 47.53
  • 45.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • FBdv:00007078day 3 of adulthood (Drosophila)
  • FBdv:00007092day 17 of adulthood (Drosophila)
  • FBdv:00007076day 1 of adulthood (Drosophila)
  • FBdv:00007105day 30 of adulthood (Drosophila)
  • FBdv:00007080day 5 of adulthood (Drosophila)
  • UBERON:0000066fully formed stage
  • FBdv:00005343prepupal stage P1 (Drosophila)
3.87e3
  • 3.87e3
  • 3.90e3
  • 4.68e3
  • 5.65e3
  • 5.68e3
  • 6.20e3
  • 9.04e3
77.56
  • 77.56
  • 77.41
  • 72.89
  • 67.22
  • 67.08
  • 64.05
  • 47.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • UBERON:0000066fully formed stage
3.93e3
  • 3.93e3
  • 7.87e3
77.24
  • 77.24
  • 54.37
AEIR
  • AEIR
  • AEIR
UBERON:0000972antenna
  • UBERON:0000066fully formed stage
4.29e3
  • 4.29e3
75.12
  • 75.12
AEIR
  • AEIR
UBERON:0001054Malpighian tubule
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • FBdv:00005341wandering third instar larval stage (Drosophila)
4.36e3
  • 4.36e3
  • 4.88e3
  • 5.72e3
74.74
  • 74.74
  • 71.72
  • 66.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • FBdv:00005293embryonic stage 2 (Drosophila)
  • FBdv:00005335embryonic stage 17 (Drosophila)
  • FBdv:00005304blastoderm stage (Drosophila)
  • FBdv:00005290pre-blastoderm stage (Drosophila)
  • FBdv:00005306embryonic stage 4 (Drosophila)
  • FBdv:00005309embryonic cycle 13 (Drosophila)
  • FBdv:00005312embryonic cycle 14 (Drosophila)
  • FBdv:00005334embryonic stage 16 (Drosophila)
  • UBERON:0000068embryo stage
  • FBdv:00005311embryonic stage 5 (Drosophila)
  • FBdv:00004450late extended germ band stage (Drosophila)
  • FBdv:00005331dorsal closure stage (Drosophila)
  • FBdv:00005321extended germ band stage (Drosophila)
4.56e3
  • 4.56e3
  • 5.04e3
  • 5.22e3
  • 6.44e3
  • 6.49e3
  • 6.49e3
  • 6.54e3
  • 6.63e3
  • 7.48e3
  • 7.70e3
  • 8.83e3
  • 9.11e3
  • 9.23e3
73.55
  • 73.55
  • 70.76
  • 69.75
  • 62.67
  • 62.40
  • 62.37
  • 62.11
  • 61.56
  • 56.63
  • 55.36
  • 48.82
  • 47.17
  • 46.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000655secondary oocyte
  • FBdv:00005283oogenesis stage S14
4.92e3
  • 4.92e3
71.45
  • 71.45
AEIR
  • AEIR
UBERON:0003153head capsule
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
71.26
  • 71.26
AEIR
  • AEIR
CL:0000025egg cell
  • FBdv:00005287unfertilized egg stage
4.97e3
  • 4.97e3
71.20
  • 71.20
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
71.05
  • 71.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
  • 6.02e3
70.47
  • 70.47
  • 65.11
AEIR
  • AEIR
  • AEIR
FBbt:00001768eye disc (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
5.49e3
  • 5.49e3
68.19
  • 68.19
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • UBERON:0000107cleavage stage
5.58e3
  • 5.58e3
67.67
  • 67.67
AEIR
  • AEIR
UBERON:0013765digestive system element
  • FBdv:00007095day 20 of adulthood (Drosophila)
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • FBdv:00007076day 1 of adulthood (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
  • FBdv:00005341wandering third instar larval stage (Drosophila)
5.76e3
  • 5.76e3
  • 5.77e3
  • 6.17e3
  • 6.53e3
  • 7.29e3
66.63
  • 66.63
  • 66.57
  • 64.24
  • 62.15
  • 57.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • FBdv:00005343prepupal stage P1 (Drosophila)
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
5.76e3
  • 5.76e3
  • 6.84e3
  • 8.28e3
66.59
  • 66.59
  • 60.35
  • 52.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • FBdv:00005337first instar larval stage (Drosophila)
  • UBERON:0000069larval stage
  • FBdv:00007019third instar - uncleared gut stage (Drosophila)
  • FBdv:00007021third instar - cleared gut stage (Drosophila)
  • FBdv:00007020third instar - partially cleared gut stage (Drosophila)
  • FBdv:00005338second instar larval stage (Drosophila)
  • FBdv:00007005third instar larval stage L2 (Drosophila)
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
  • UBERON:0004730instar larval stage
  • FBdv:00007007late third instar larval stage (Drosophila)
5.90e3
  • 5.90e3
  • 7.27e3
  • 8.65e3
  • 8.86e3
  • 9.01e3
  • 9.36e3
  • 9.36e3
  • 9.41e3
  • 9.80e3
  • 1.03e4
  • 1.12e4
65.79
  • 65.79
  • 57.87
  • 49.84
  • 48.63
  • 47.74
  • 45.74
  • 45.71
  • 45.46
  • 43.19
  • 40.25
  • 34.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006868seminal fluid secreting gland
  • UBERON:0000066fully formed stage
5.95e3
  • 5.95e3
65.50
  • 65.50
AEIR
  • AEIR
UBERON:0000939imaginal disc
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
5.98e3
  • 5.98e3
  • 8.18e3
65.33
  • 65.33
  • 52.59
AEIR
  • AEIR
  • AEIR
FBbt:00003143adult hindgut (Drosophila)
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
64.62
  • 64.62
AEIR
  • AEIR
FBbt:00004520mouthpart (Drosophila)
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
63.13
  • 63.13
AEIR
  • AEIR
UBERON:0005399male reproductive gland
  • FBdv:00007079day 4 of adulthood (Drosophila)
6.37e3
  • 6.37e3
63.05
  • 63.05
AEIR
  • AEIR
FBbt:00003023adult abdomen (Drosophila)
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
62.32
  • 62.32
AEIR
  • AEIR
FBbt:00001684embryonic/larval hemocyte (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
7.04e3
  • 7.04e3
59.18
  • 59.18
AEIR
  • AEIR
UBERON:0000994spermathecum
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
55.80
  • 55.80
AEIR
  • AEIR
UBERON:0001045midgut
  • UBERON:0000069larval stage
  • UBERON:0000066fully formed stage
7.65e3
  • 7.65e3
  • 8.39e3
55.64
  • 55.64
  • 51.35
AEIR
  • AEIR
  • AEIR
UBERON:0003142prepupa
  • FBdv:00005343prepupal stage P1 (Drosophila)
  • FBdv:00005342prepupal stage (Drosophila)
7.76e3
  • 7.76e3
  • 9.86e3
55.01
  • 55.01
  • 42.83
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
melanogaster subgroup2 species2 genesCompare expression
melanogaster group3 species3 genesCompare expression
Drosophila5 species5 genesCompare expression
Ecdysozoa6 species6 genesCompare expression
Bilateria24 species37 genesCompare expression

Orthology information comes from OMA : FBgn0003218.

Cross-references

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