D. melanogaster Gene: scf - FBgn0025682 - Drosophila melanogaster (fruit fly)

General information

Ensembl IDFBgn0025682
Namescf
Descriptionsupercoiling factor [Source:FlyBase gene name;Acc:FBgn0025682]
OrganismDrosophila melanogaster (fruit fly)
Synonym(s)anon-est:posey14, best:ck02682, cg9148, cg9148-pa, cg9148-pb, cg9148-ra, cg9148-rb, ck02682, dcb-45, dmel\cg9148, dna supercoiling factor, fbgn0025546, fbtr0004383, fbtr0004384, q8szk6, scf, scf[+]r1.6, scf[+]r1.8
Orthologs(s)49 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
FBbt:00001684embryonic/larval hemocyte (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
169
  • 169
99.02
  • 99.02
AEIR
  • AEIR
UBERON:0003917arthropod fat body
  • FBdv:00005355pharate adult stage P8 (Drosophila)
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • UBERON:0004730instar larval stage
  • FBdv:00005343prepupal stage P1 (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
  • UBERON:0000069larval stage
  • UBERON:0000066fully formed stage
285
  • 285
  • 392
  • 882
  • 912
  • 1.22e3
  • 1.60e3
  • 2.27e3
98.36
  • 98.36
  • 97.74
  • 94.89
  • 94.72
  • 92.91
  • 90.71
  • 86.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • FBdv:00005332embryonic stage 15 (Drosophila)
  • FBdv:00005324embryonic stage 10 (Drosophila)
  • FBdv:00005334embryonic stage 16 (Drosophila)
  • FBdv:00005331dorsal closure stage (Drosophila)
  • FBdv:00005321extended germ band stage (Drosophila)
  • FBdv:00004450late extended germ band stage (Drosophila)
  • UBERON:0000068embryo stage
  • FBdv:00005335embryonic stage 17 (Drosophila)
  • FBdv:00014201early extended germ band stage (Drosophila)
  • FBdv:00005312embryonic cycle 14 (Drosophila)
  • FBdv:00005311embryonic stage 5 (Drosophila)
  • FBdv:00005290pre-blastoderm stage (Drosophila)
  • FBdv:00005306embryonic stage 4 (Drosophila)
  • FBdv:00005304blastoderm stage (Drosophila)
  • FBdv:00005309embryonic cycle 13 (Drosophila)
  • FBdv:00005293embryonic stage 2 (Drosophila)
454
  • 454
  • 504
  • 775
  • 885
  • 1.13e3
  • 1.74e3
  • 2.11e3
  • 2.45e3
  • 3.46e3
  • 3.92e3
  • 3.96e3
  • 4.24e3
  • 4.43e3
  • 4.87e3
  • 4.87e3
  • 5.13e3
97.38
  • 97.38
  • 97.08
  • 95.51
  • 94.87
  • 93.43
  • 89.91
  • 87.78
  • 85.82
  • 79.94
  • 77.25
  • 77.06
  • 75.40
  • 74.30
  • 71.78
  • 71.76
  • 70.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000939imaginal disc
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
669
  • 669
  • 4.29e3
96.13
  • 96.13
  • 75.14
AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • FBdv:00005343prepupal stage P1 (Drosophila)
  • FBdv:00007078day 3 of adulthood (Drosophila)
  • FBdv:00007092day 17 of adulthood (Drosophila)
  • UBERON:0000066fully formed stage
  • FBdv:00007076day 1 of adulthood (Drosophila)
  • FBdv:00007105day 30 of adulthood (Drosophila)
  • FBdv:00007080day 5 of adulthood (Drosophila)
705
  • 705
  • 2.16e3
  • 2.42e3
  • 3.14e3
  • 3.94e3
  • 4.64e3
  • 5.16e3
95.92
  • 95.92
  • 87.46
  • 85.98
  • 81.81
  • 77.18
  • 73.09
  • 70.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005399male reproductive gland
  • FBdv:00007079day 4 of adulthood (Drosophila)
940
  • 940
94.55
  • 94.55
AEIR
  • AEIR
UBERON:0002548larva
  • FBdv:00007005third instar larval stage L2 (Drosophila)
  • UBERON:0000069larval stage
  • FBdv:00005338second instar larval stage (Drosophila)
  • FBdv:00005337first instar larval stage (Drosophila)
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00007021third instar - cleared gut stage (Drosophila)
  • FBdv:00005340early third instar larval stage (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
  • UBERON:0004730instar larval stage
  • FBdv:00007007late third instar larval stage (Drosophila)
  • FBdv:00007020third instar - partially cleared gut stage (Drosophila)
  • FBdv:00007019third instar - uncleared gut stage (Drosophila)
1.07e3
  • 1.07e3
  • 1.12e3
  • 1.20e3
  • 1.51e3
  • 1.55e3
  • 2.13e3
  • 2.21e3
  • 2.62e3
  • 2.96e3
  • 3.02e3
  • 3.44e3
  • 3.95e3
93.78
  • 93.78
  • 93.51
  • 93.07
  • 91.26
  • 91.02
  • 87.66
  • 87.17
  • 84.83
  • 82.83
  • 82.47
  • 80.09
  • 77.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00005343prepupal stage P1 (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
1.09e3
  • 1.09e3
  • 1.16e3
  • 3.03e3
93.70
  • 93.70
  • 93.26
  • 82.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003143pupa
  • UBERON:0000070pupal stage
  • FBdv:00005355pharate adult stage P8 (Drosophila)
  • FBdv:00005356pharate adult stage P9 (Drosophila)
  • FBdv:00005353pupal stage P6 (Drosophila)
  • FBdv:00005348prepupal stage P4(ii) (Drosophila)
  • FBdv:00005366pharate adult stage P15 (Drosophila)
1.09e3
  • 1.09e3
  • 1.78e3
  • 1.85e3
  • 1.98e3
  • 2.27e3
  • 3.37e3
93.69
  • 93.69
  • 89.66
  • 89.26
  • 88.53
  • 86.84
  • 80.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003142prepupa
  • FBdv:00005342prepupal stage (Drosophila)
  • FBdv:00005343prepupal stage P1 (Drosophila)
1.18e3
  • 1.18e3
  • 1.30e3
93.15
  • 93.15
  • 92.48
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • FBdv:00007078day 3 of adulthood (Drosophila)
  • FBdv:00007085day 10 of adulthood (Drosophila)
  • UBERON:0000104life cycle
  • FBdv:00007076day 1 of adulthood (Drosophila)
  • FBdv:00005364pharate adult stage P13 (Drosophila)
  • FBdv:00007083day 8 of adulthood (Drosophila)
  • FBdv:00007095day 20 of adulthood (Drosophila)
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • UBERON:0000066fully formed stage
1.28e3
  • 1.28e3
  • 1.61e3
  • 2.05e3
  • 2.20e3
  • 2.33e3
  • 2.60e3
  • 2.84e3
  • 2.85e3
  • 3.17e3
92.56
  • 92.56
  • 90.65
  • 88.12
  • 87.25
  • 86.50
  • 84.94
  • 83.56
  • 83.47
  • 81.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
92.52
  • 92.52
AEIR
  • AEIR
FBbt:00001778wing disc (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
1.33e3
  • 1.33e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0003153head capsule
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
90.77
  • 90.77
AEIR
  • AEIR
FBbt:00004784capitellum (Drosophila)
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
88.90
  • 88.90
AEIR
  • AEIR
UBERON:0013765digestive system element
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
  • FBdv:00007076day 1 of adulthood (Drosophila)
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • FBdv:00007095day 20 of adulthood (Drosophila)
1.97e3
  • 1.97e3
  • 5.20e3
  • 5.31e3
  • 6.29e3
  • 6.31e3
88.56
  • 88.56
  • 69.88
  • 69.23
  • 63.51
  • 63.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
  • 2.28e3
87.40
  • 87.40
  • 86.78
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • FBdv:00005355pharate adult stage P8 (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
2.22e3
  • 2.22e3
  • 2.38e3
87.13
  • 87.13
  • 86.19
AEIR
  • AEIR
  • AEIR
FBbt:00001768eye disc (Drosophila)
  • FBdv:00005339third instar larval stage (Drosophila)
2.44e3
  • 2.44e3
85.84
  • 85.84
AEIR
  • AEIR
UBERON:0006868seminal fluid secreting gland
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
85.69
  • 85.69
AEIR
  • AEIR
UBERON:0001054Malpighian tubule
  • FBdv:00005341wandering third instar larval stage (Drosophila)
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.53e3
  • 2.53e3
  • 8.37e3
  • 8.39e3
85.36
  • 85.36
  • 51.47
  • 51.34
AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00004514second segment of antenna (Drosophila)
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
81.59
  • 81.59
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • FBdv:00007079day 4 of adulthood (Drosophila)
  • FBdv:00005266oogenesis stage S6
3.38e3
  • 3.38e3
  • 4.04e3
  • 8.33e3
80.41
  • 80.41
  • 76.58
  • 51.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000092post-embryonic stage
  • FBdv:00005301embryonic stage 3 (Drosophila)
  • FBdv:00005291embryonic stage 1 (Drosophila)
  • FBdv:00005293embryonic stage 2 (Drosophila)
3.59e3
  • 3.59e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
79.22
  • 79.22
  • 49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003199egg chamber
  • FBdv:00005286egg stage
3.66e3
  • 3.66e3
78.76
  • 78.76
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
78.54
  • 78.54
AEIR
  • AEIR
FBbt:00003023adult abdomen (Drosophila)
  • UBERON:0000066fully formed stage
3.96e3
  • 3.96e3
77.04
  • 77.04
AEIR
  • AEIR
FBbt:00003133crop (Drosophila)
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
76.38
  • 76.38
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • UBERON:0000107cleavage stage
4.13e3
  • 4.13e3
76.06
  • 76.06
AEIR
  • AEIR
CL:0000655secondary oocyte
  • FBdv:00005283oogenesis stage S14
4.29e3
  • 4.29e3
75.16
  • 75.16
AEIR
  • AEIR
FBbt:00004052thoracico-abdominal ganglion (Drosophila)
  • UBERON:0000066fully formed stage
4.29e3
  • 4.29e3
75.11
  • 75.11
AEIR
  • AEIR
CL:0000025egg cell
  • FBdv:00005287unfertilized egg stage
4.33e3
  • 4.33e3
74.91
  • 74.91
AEIR
  • AEIR
FBbt:00004911oviduct (Drosophila)
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
70.22
  • 70.22
AEIR
  • AEIR
FBbt:00004520mouthpart (Drosophila)
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
69.82
  • 69.82
AEIR
  • AEIR
FBbt:00003143adult hindgut (Drosophila)
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
68.96
  • 68.96
AEIR
  • AEIR
UBERON:0000994spermathecum
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
67.41
  • 67.41
AEIR
  • AEIR
UBERON:0001045midgut
  • UBERON:0000069larval stage
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
  • 9.31e3
64.37
  • 64.37
  • 46.04
AEIR
  • AEIR
  • AEIR
CL:0000394plasmatocyte
  • FBdv:00005328embryonic stage 13 (Drosophila)
  • FBdv:00005330embryonic stage 14 (Drosophila)
  • FBdv:00005332embryonic stage 15 (Drosophila)
  • FBdv:00005334embryonic stage 16 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000395procrystal cell
  • FBdv:00005325embryonic stage 11 (Drosophila)
  • FBdv:00005327embryonic stage 12 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
FBbt:00000057yolk nucleus (Drosophila)
  • FBdv:00005318embryonic stage 6 (Drosophila)
  • FBdv:00005319embryonic stage 7 (Drosophila)
  • FBdv:00005322embryonic stage 8 (Drosophila)
  • FBdv:00005323embryonic stage 9 (Drosophila)
  • FBdv:00005324embryonic stage 10 (Drosophila)
  • FBdv:00005306embryonic stage 4 (Drosophila)
  • FBdv:00005311embryonic stage 5 (Drosophila)
  • FBdv:00005325embryonic stage 11 (Drosophila)
  • FBdv:00005327embryonic stage 12 (Drosophila)
  • FBdv:00005328embryonic stage 13 (Drosophila)
  • FBdv:00005330embryonic stage 14 (Drosophila)
  • FBdv:00005332embryonic stage 15 (Drosophila)
  • FBdv:00005334embryonic stage 16 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00001690crystal cell (Drosophila)
  • FBdv:00005328embryonic stage 13 (Drosophila)
  • FBdv:00005330embryonic stage 14 (Drosophila)
  • FBdv:00005332embryonic stage 15 (Drosophila)
  • FBdv:00005334embryonic stage 16 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00001693embryonic/larval garland cell (Drosophila)
  • FBdv:00005328embryonic stage 13 (Drosophila)
  • FBdv:00005330embryonic stage 14 (Drosophila)
  • FBdv:00005332embryonic stage 15 (Drosophila)
  • FBdv:00005334embryonic stage 16 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00005462garland cell primordium (Drosophila)
  • FBdv:00005325embryonic stage 11 (Drosophila)
  • FBdv:00005327embryonic stage 12 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
FBbt:00005520fat body/gonad primordium (Drosophila)
  • FBdv:00005327embryonic stage 12 (Drosophila)
  • FBdv:00005325embryonic stage 11 (Drosophila)
8.62e3
  • 8.62e3
  • 8.63e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
FBbt:00017006plasmatocyte primordium (Drosophila)
  • FBdv:00005323embryonic stage 9 (Drosophila)
  • FBdv:00005324embryonic stage 10 (Drosophila)
  • FBdv:00005325embryonic stage 11 (Drosophila)
  • FBdv:00005327embryonic stage 12 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
  • 8.62e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00017007crystal cell primordium (Drosophila)
  • FBdv:00005323embryonic stage 9 (Drosophila)
  • FBdv:00005324embryonic stage 10 (Drosophila)
8.62e3
  • 8.62e3
  • 8.62e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
FBbt:00000127head mesoderm (Drosophila)
  • FBdv:00005319embryonic stage 7 (Drosophila)
  • FBdv:00005322embryonic stage 8 (Drosophila)
  • FBdv:00005323embryonic stage 9 (Drosophila)
  • FBdv:00005324embryonic stage 10 (Drosophila)
8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00000128trunk mesoderm (Drosophila)
  • FBdv:00005319embryonic stage 7 (Drosophila)
  • FBdv:00005322embryonic stage 8 (Drosophila)
  • FBdv:00005325embryonic stage 11 (Drosophila)
  • FBdv:00005327embryonic stage 12 (Drosophila)
  • FBdv:00005323embryonic stage 9 (Drosophila)
  • FBdv:00005324embryonic stage 10 (Drosophila)
8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00001704embryonic/larval fat body (Drosophila)
  • FBdv:00005330embryonic stage 14 (Drosophila)
  • FBdv:00005328embryonic stage 13 (Drosophila)
  • FBdv:00005332embryonic stage 15 (Drosophila)
  • FBdv:00005334embryonic stage 16 (Drosophila)
8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
FBbt:00005519visceral muscle primordium (Drosophila)
  • FBdv:00005325embryonic stage 11 (Drosophila)
  • FBdv:00005327embryonic stage 12 (Drosophila)
8.63e3
  • 8.63e3
  • 8.63e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
melanogaster subgroup2 species2 genesCompare expression
melanogaster group3 species3 genesCompare expression
Drosophila5 species5 genesCompare expression
Ecdysozoa6 species6 genesCompare expression
Bilateria25 species49 genesCompare expression

Orthology information comes from OMA : FBgn0025682.

Cross-references

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