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C. elegans Gene: cat-1 - WBGene00000295 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00000295
Namecat-1
DescriptionCaenorhabditis elegans Protein CAT-1, isoform a (cat-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_001029765]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)57 orthologs
Paralog(s)26 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000107cleavage stage
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
1.06e4
  • 1.06e4
  • 1.19e4
  • 1.22e4
  • 1.31e4
  • 1.58e4
  • 1.65e4
  • 1.71e4
  • 1.75e4
  • 2.64e4
  • 2.75e4
72.22
  • 72.22
  • 68.76
  • 68.04
  • 65.57
  • 58.58
  • 56.81
  • 55.15
  • 54.08
  • 30.71
  • 27.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.15e4
  • 1.15e4
69.78
  • 69.78
AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
1.26e4
  • 1.26e4
  • 1.50e4
  • 1.61e4
  • 1.63e4
  • 1.68e4
67.07
  • 67.07
  • 60.73
  • 57.79
  • 57.21
  • 56.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
1.65e4
  • 1.65e4
  • 1.79e4
  • 2.00e4
  • 2.18e4
  • 2.18e4
  • 2.19e4
  • 2.19e4
  • 2.21e4
  • 2.22e4
  • 2.25e4
  • 2.25e4
56.71
  • 56.71
  • 53.20
  • 47.55
  • 42.95
  • 42.93
  • 42.67
  • 42.52
  • 41.97
  • 41.80
  • 41.14
  • 40.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria25 species57 genesCompare expression

Orthology information comes from OMA : WBGene00000295.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression
Eukaryota26 genesCompare expression

Paralogy information comes from OMA : WBGene00000295.

Cross-references

EnsemblWBGene00000295 (cat-1)
WormBaseWBGene00000295
EMBLFO081036
Uniprot/SPTREMBLQ7Z1Q0, Q7Z1Q0_CAEEL, Q9GNP0, Q9GNP0_CAEEL

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