C. elegans Gene: col-71 - WBGene00000647 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00000647
Namecol-71
DescriptionCaenorhabditis elegans Protein COL-71 (col-71) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_062161]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:00072322 cell stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
287
  • 287
  • 4.21e3
  • 6.84e3
  • 7.05e3
  • 1.18e4
  • 1.82e4
  • 2.06e4
  • 2.21e4
  • 2.38e4
  • 3.07e4
99.25272
  • 99.25272
  • 89.00137
  • 82.13371
  • 81.57667
  • 69.12024
  • 52.34741
  • 46.10923
  • 42.20785
  • 37.89819
  • 19.80482
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
353
  • 353
  • 2.85e3
  • 3.71e3
  • 4.70e3
  • 6.04e3
  • 6.56e3
  • 8.21e3
  • 1.02e4
  • 1.06e4
  • 1.07e4
  • 1.23e4
  • 1.27e4
  • 1.30e4
  • 1.47e4
99.08035
  • 99.08035
  • 92.56485
  • 90.30448
  • 87.72159
  • 84.22070
  • 82.87516
  • 78.55202
  • 73.40479
  • 72.27720
  • 72.12308
  • 67.84349
  • 66.69746
  • 65.97811
  • 61.53228
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
6.04e3
  • 6.04e3
  • 8.80e3
  • 9.54e3
  • 1.29e4
  • 1.46e4
84.21104
  • 84.21104
  • 77.00926
  • 75.08160
  • 66.23081
  • 61.77582
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
8.59e3
  • 8.59e3
  • 1.36e4
77.57142
  • 77.57142
  • 64.58617
AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.48e4
  • 1.48e4
61.33567
  • 61.33567
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLFO080566
EnsemblWBGene00000647 (col-71)
Uniprot/SPTREMBLQ9N4U2, Q9N4U2_CAEEL
WormBaseWBGene00000647

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