C. elegans Gene: col-180 - WBGene00000753 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00000753
Namecol-180
DescriptionCaenorhabditis elegans Protein COL-180 (col-180) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_077559]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
174
  • 174
  • 258
  • 404
  • 1.04e3
  • 5.43e3
  • 6.52e3
  • 6.54e3
  • 1.04e4
  • 1.26e4
  • 1.30e4
  • 1.32e4
  • 1.32e4
  • 1.59e4
  • 1.66e4
99.54879
  • 99.54879
  • 99.32918
  • 98.94708
  • 97.28348
  • 85.81667
  • 82.97276
  • 82.91090
  • 72.95764
  • 67.05937
  • 65.98268
  • 65.47403
  • 65.46721
  • 58.58596
  • 56.51380
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000106zygote stage
  • UBERON:0000109gastrula stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:00072322 cell stage
  • UBERON:0000107cleavage stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
680
  • 680
  • 959
  • 1.15e3
  • 2.72e3
  • 6.58e3
  • 7.80e3
  • 8.12e3
  • 8.85e3
  • 9.97e3
  • 1.61e4
  • 1.64e4
  • 2.43e4
  • 3.20e4
98.22575
  • 98.22575
  • 97.49722
  • 97.00069
  • 92.90184
  • 82.80131
  • 79.63493
  • 78.78649
  • 76.87937
  • 73.95337
  • 58.06192
  • 57.06624
  • 36.49086
  • 16.52715
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
7.24e3
  • 7.24e3
  • 7.48e3
  • 1.03e4
  • 1.81e4
81.07813
  • 81.07813
  • 80.44885
  • 72.97337
  • 52.79966
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
  • 1.59e4
72.66789
  • 72.66789
  • 58.53933
AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.47e4
  • 1.47e4
61.49963
  • 61.49963
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLZ69787
EnsemblWBGene00000753 (col-180)
Uniprot/SPTREMBLQ18620, Q18620_CAEEL
WormBaseWBGene00000753

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