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C. elegans Gene: cul-1 - WBGene00000836 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00000836
Namecul-1
DescriptionCaenorhabditis elegans Protein CUL-1 (cul-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_066908]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q18985
Orthologs(s)27 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:0000107cleavage stage
  • UBERON:00072322 cell stage
  • UBERON:0000106zygote stage
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
1.07e3
  • 1.07e3
  • 1.34e3
  • 1.38e3
  • 1.52e3
  • 2.45e3
  • 4.20e3
  • 4.28e3
  • 4.82e3
  • 5.09e3
  • 6.45e3
  • 6.55e3
  • 1.39e4
97.21
  • 97.21
  • 96.48
  • 96.38
  • 96.02
  • 93.59
  • 88.99
  • 88.78
  • 87.38
  • 86.67
  • 83.08
  • 82.84
  • 63.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
  • 3.18e3
  • 3.26e3
  • 3.33e3
  • 3.50e3
92.20
  • 92.20
  • 91.65
  • 91.45
  • 91.27
  • 90.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000108blastula stage
  • UBERON:0000109gastrula stage
3.27e3
  • 3.27e3
  • 3.57e3
  • 3.68e3
  • 3.74e3
  • 4.10e3
  • 4.77e3
  • 4.85e3
  • 5.79e3
  • 5.85e3
  • 6.02e3
  • 6.15e3
  • 6.98e3
  • 7.29e3
  • 7.79e3
  • 1.91e4
  • 1.91e4
91.43
  • 91.43
  • 90.63
  • 90.35
  • 90.19
  • 89.24
  • 87.49
  • 87.29
  • 84.82
  • 84.66
  • 84.23
  • 83.87
  • 81.71
  • 80.90
  • 79.59
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
  • 6.32e3
87.04
  • 87.04
  • 83.44
AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
5.62e3
  • 5.62e3
85.27
  • 85.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : WBGene00000836.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : WBGene00000836.

Cross-references

EnsemblWBGene00000836 (cul-1)
WormBaseWBGene00000836
EMBLU58083, Z35639
Uniprot/SWISSPROTCUL1_CAEEL, Q17389

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