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C. elegans Gene: gpd-3 - WBGene00001685 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00001685
Namegpd-3
DescriptionCaenorhabditis elegans Protein GPD-3 (gpd-3) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_076133]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)77 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • UBERON:0000106zygote stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:00072322 cell stage
  • UBERON:0000068embryo stage
194
  • 194
  • 199
  • 277
  • 291
  • 318
  • 583
  • 1.21e3
  • 1.58e3
  • 1.69e3
  • 2.22e3
  • 2.27e3
  • 2.98e3
99.49
  • 99.49
  • 99.48
  • 99.28
  • 99.24
  • 99.17
  • 98.47
  • 96.84
  • 95.86
  • 95.58
  • 94.17
  • 94.04
  • 92.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
290
  • 290
  • 410
  • 453
  • 716
  • 785
  • 814
  • 1.15e3
  • 1.15e3
  • 1.23e3
  • 1.68e3
  • 2.65e3
  • 2.68e3
  • 4.27e3
  • 5.99e3
99.24
  • 99.24
  • 98.93
  • 98.82
  • 98.13
  • 97.94
  • 97.87
  • 96.99
  • 96.98
  • 96.78
  • 95.59
  • 93.05
  • 92.99
  • 88.81
  • 84.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
347
  • 347
  • 392
  • 769
  • 1.11e3
  • 1.31e3
99.09
  • 99.09
  • 98.98
  • 97.99
  • 97.09
  • 96.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
668
  • 668
98.25
  • 98.25
AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
5.13e3
  • 5.13e3
  • 7.73e3
86.55
  • 86.55
  • 79.74
AEIR
  • AEIR
  • AEIR
CL:0000000cell
  • UBERON:0000066fully formed stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000068embryo stage
1.91e4
  • 1.91e4
  • 1.91e4
  • 1.91e4
  • 1.91e4
  • 1.91e4
  • 1.91e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa5 species7 genesCompare expression
Bilateria24 species77 genesCompare expression

Orthology information comes from OMA : WBGene00001685.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Caenorhabditis1 geneCompare expression

Paralogy information comes from OMA : WBGene00001685.

Cross-references

EnsemblWBGene00001685 (gpd-3)
WormBaseWBGene00001685
EMBLFO080552, X15254
Uniprot/SWISSPROTG3P3_CAEEL, P17330

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