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C. elegans Gene: kat-1 - WBGene00002183 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00002183
Namekat-1
DescriptionCaenorhabditis elegans Protein KAT-1 (kat-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_063054]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)26 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
292
  • 292
  • 382
  • 711
  • 780
  • 814
  • 1.32e3
  • 1.41e3
  • 1.53e3
  • 1.70e3
  • 1.85e3
  • 1.95e3
  • 2.77e3
  • 2.81e3
  • 3.74e3
99.24
  • 99.24
  • 99.00
  • 98.14
  • 97.96
  • 97.87
  • 96.54
  • 96.31
  • 96.00
  • 95.54
  • 95.16
  • 94.88
  • 92.73
  • 92.62
  • 90.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
460
  • 460
  • 501
98.80
  • 98.80
  • 98.69
AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
597
  • 597
  • 958
  • 1.43e3
  • 2.03e3
  • 2.76e3
98.44
  • 98.44
  • 97.49
  • 96.26
  • 94.67
  • 92.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
799
  • 799
  • 1.01e3
  • 1.15e3
  • 1.17e3
  • 1.80e3
  • 2.24e3
  • 2.43e3
  • 2.77e3
  • 2.96e3
  • 3.93e3
  • 5.74e3
  • 8.56e3
97.91
  • 97.91
  • 97.34
  • 97.00
  • 96.94
  • 95.27
  • 94.14
  • 93.63
  • 92.73
  • 92.24
  • 89.71
  • 84.94
  • 77.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
2.84e3
  • 2.84e3
92.57
  • 92.57
AEIR
  • AEIR
WBbt:0005792intestinal cell (C elegans)
  • UBERON:0000104life cycle
1.91e4
  • 1.91e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : WBGene00002183.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : WBGene00002183.

Cross-references

EnsemblWBGene00002183 (kat-1)
WormBaseWBGene00002183
EMBLFO081112
Uniprot/SPTREMBLQ22100, THILH_CAEEL

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