C. elegans Gene: ksr-1 - WBGene00002239 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00002239
Nameksr-1
DescriptionCaenorhabditis elegans Protein KSR-1 (ksr-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_076995]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000109gastrula stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:00072322 cell stage
  • UBERON:0000106zygote stage
  • UBERON:0000107cleavage stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
6.95e3
  • 6.95e3
  • 7.24e3
  • 7.46e3
  • 7.62e3
  • 8.10e3
  • 8.72e3
  • 8.97e3
  • 9.45e3
  • 1.07e4
  • 1.10e4
  • 1.34e4
  • 1.59e4
  • 1.88e4
81.84312
  • 81.84312
  • 81.08549
  • 80.52530
  • 80.09013
  • 78.85254
  • 77.21325
  • 76.57371
  • 75.32436
  • 72.06406
  • 71.21285
  • 65.09918
  • 58.51244
  • 50.82889
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
7.51e3
  • 7.51e3
80.38480
  • 80.38480
AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
  • 8.01e3
  • 8.52e3
  • 8.90e3
  • 1.08e4
79.81342
  • 79.81342
  • 79.08868
  • 77.73452
  • 76.74514
  • 71.73964
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000068embryo stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
8.81e3
  • 8.81e3
  • 9.12e3
  • 9.85e3
  • 1.06e4
  • 1.08e4
  • 1.10e4
  • 1.13e4
  • 1.15e4
  • 1.16e4
  • 1.20e4
  • 1.25e4
  • 1.32e4
  • 1.33e4
  • 1.33e4
76.99131
  • 76.99131
  • 76.16428
  • 74.26475
  • 72.24429
  • 71.75009
  • 71.16011
  • 70.57327
  • 70.07286
  • 69.70634
  • 68.75757
  • 67.38071
  • 65.58837
  • 65.29018
  • 65.24687
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
73.17547
  • 73.17547
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLFO081136, S80647, U38820
EnsemblWBGene00002239 (ksr-1)
Uniprot/SPTREMBLG5EFD2, KSRA_CAEEL
WormBaseWBGene00002239

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