C. elegans Gene: mca-3 - WBGene00003153 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00003153
Namemca-3
DescriptionCaenorhabditis elegans Protein MCA-3, isoform a (mca-3) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_067893]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)90 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000107cleavage stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
860
  • 860
  • 917
  • 967
  • 1.17e3
  • 1.38e3
  • 1.50e3
  • 1.93e3
  • 2.13e3
  • 2.15e3
  • 3.56e3
  • 4.70e3
  • 6.88e3
97.75
  • 97.75
  • 97.60
  • 97.47
  • 96.93
  • 96.38
  • 96.07
  • 94.95
  • 94.42
  • 94.37
  • 90.66
  • 87.67
  • 81.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
967
  • 967
97.47
  • 97.47
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
1.64e3
  • 1.64e3
  • 8.43e3
  • 8.58e3
  • 9.32e3
  • 1.07e4
  • 1.07e4
  • 1.10e4
  • 1.20e4
  • 1.28e4
  • 1.32e4
  • 1.32e4
  • 1.38e4
  • 1.39e4
  • 1.41e4
95.71
  • 95.71
  • 77.90
  • 77.50
  • 75.58
  • 72.00
  • 71.87
  • 71.22
  • 68.66
  • 66.48
  • 65.36
  • 65.33
  • 63.74
  • 63.46
  • 62.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
2.12e3
  • 2.12e3
  • 2.38e3
  • 2.96e3
  • 3.33e3
  • 3.36e3
94.45
  • 94.45
  • 93.76
  • 92.23
  • 91.27
  • 91.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
8.29e3
  • 8.29e3
  • 1.07e4
78.28
  • 78.28
  • 71.86
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria26 species90 genesCompare expression

Orthology information comes from OMA : WBGene00003153.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression
Metazoa2 genesCompare expression
Eukaryota9 genesCompare expression

Paralogy information comes from OMA : WBGene00003153.

Cross-references

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