C. elegans Gene: ndx-4 - WBGene00003581 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00003581
Namendx-4
DescriptionCaenorhabditis elegans Protein NDX-4 (ndx-4) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_061012]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000107cleavage stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
1.15e3
  • 1.15e3
  • 1.59e3
  • 2.13e3
  • 2.24e3
  • 2.80e3
  • 3.08e3
  • 3.63e3
  • 3.89e3
  • 4.61e3
  • 5.24e3
  • 5.65e3
  • 7.34e3
96.99564
  • 96.99564
  • 95.84661
  • 94.42908
  • 94.13284
  • 92.65687
  • 91.92570
  • 90.49210
  • 89.80980
  • 87.91244
  • 86.26510
  • 85.18531
  • 80.77311
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
1.43e3
  • 1.43e3
  • 1.80e3
  • 2.03e3
  • 2.09e3
  • 3.77e3
  • 4.25e3
  • 5.06e3
  • 5.23e3
  • 5.25e3
  • 5.56e3
  • 5.79e3
  • 5.79e3
  • 6.21e3
  • 7.21e3
96.26187
  • 96.26187
  • 95.28063
  • 94.69158
  • 94.52230
  • 90.12555
  • 88.85632
  • 86.73151
  • 86.29315
  • 86.23639
  • 85.43559
  • 84.82253
  • 84.82224
  • 83.72801
  • 81.10068
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
2.81e3
  • 2.81e3
92.64809
  • 92.64809
AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
3.43e3
  • 3.43e3
  • 3.93e3
  • 3.95e3
  • 4.02e3
  • 4.81e3
91.01566
  • 91.01566
  • 89.69028
  • 89.64915
  • 89.47597
  • 87.38759
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
5.16e3
  • 5.16e3
  • 6.30e3
86.48072
  • 86.48072
  • 83.48276
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLAL032625
EnsemblWBGene00003581 (ndx-4)
Uniprot/SWISSPROTAP4A_CAEEL, Q9U2M7
WormBaseWBGene00003581

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