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C. elegans Gene: oct-1 - WBGene00003842 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00003842
Nameoct-1
DescriptionCaenorhabditis elegans Protein OCT-1, isoform b (oct-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_001026311]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)o02270
Orthologs(s)6 orthologs
Paralog(s)26 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
1.11e4
  • 1.11e4
  • 1.20e4
  • 1.30e4
  • 1.33e4
  • 1.45e4
70.89
  • 70.89
  • 68.54
  • 66.03
  • 65.02
  • 62.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
1.13e4
  • 1.13e4
  • 1.46e4
  • 1.46e4
  • 1.50e4
  • 1.51e4
  • 1.61e4
  • 1.63e4
  • 1.67e4
  • 1.68e4
  • 1.68e4
  • 1.90e4
  • 1.93e4
  • 2.00e4
  • 2.08e4
70.42
  • 70.42
  • 61.62
  • 61.60
  • 60.79
  • 60.42
  • 57.71
  • 57.38
  • 56.29
  • 56.06
  • 56.04
  • 50.11
  • 49.49
  • 47.52
  • 45.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
  • 1.35e4
  • 1.67e4
  • 2.00e4
  • 2.61e4
  • 2.63e4
67.90
  • 67.90
  • 64.49
  • 56.16
  • 47.47
  • 31.57
  • 30.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression

Orthology information comes from OMA : WBGene00003842.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota26 genesCompare expression

Paralogy information comes from OMA : WBGene00003842.

Cross-references

EnsemblWBGene00003842 (oct-1)
WormBaseWBGene00003842
EMBLAF110415, Z83228
Uniprot/SWISSPROTOCT1_CAEEL, Q9U539

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