C. elegans Gene: pxn-1 - WBGene00004256 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00004256
Namepxn-1
DescriptionCaenorhabditis elegans Protein PXN-1 (pxn-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_072787]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • UBERON:0000068embryo stage
6.35e3
  • 6.35e3
  • 1.11e4
  • 1.17e4
  • 1.25e4
  • 1.25e4
  • 1.28e4
  • 1.32e4
  • 1.34e4
  • 1.39e4
  • 1.40e4
  • 1.45e4
  • 1.49e4
  • 1.59e4
  • 1.78e4
83.42606
  • 83.42606
  • 70.99379
  • 69.43345
  • 67.46624
  • 67.30505
  • 66.58452
  • 65.62461
  • 65.01052
  • 63.74735
  • 63.31042
  • 62.24466
  • 61.01056
  • 58.54155
  • 53.41757
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
6.72e3
  • 6.72e3
  • 8.64e3
  • 1.00e4
  • 1.08e4
  • 1.26e4
  • 1.29e4
  • 1.47e4
  • 1.56e4
  • 2.52e4
82.45546
  • 82.45546
  • 77.43844
  • 73.88283
  • 71.82198
  • 66.98311
  • 66.41800
  • 61.63096
  • 59.34236
  • 34.20780
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
8.73e3
  • 8.73e3
  • 1.01e4
  • 1.01e4
  • 1.17e4
  • 1.18e4
77.18725
  • 77.18725
  • 73.60812
  • 73.51313
  • 69.51854
  • 69.27720
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.20e4
  • 1.20e4
68.56443
  • 68.56443
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLFO081391
EnsemblWBGene00004256 (pxn-1)
Uniprot/SWISSPROTPXDN_CAEEL, Q1ENI8
WormBaseWBGene00004256

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