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C. elegans Gene: rad-50 - WBGene00004296 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00004296
Namerad-50
DescriptionCaenorhabditis elegans Protein RAD-50, isoform a (rad-50) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_073669]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q22177
Orthologs(s)25 orthologs
Paralog(s)16 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
1.69e3
  • 1.69e3
  • 2.74e3
  • 5.09e3
  • 5.54e3
  • 5.62e3
  • 5.68e3
  • 5.86e3
  • 6.94e3
  • 7.22e3
  • 7.78e3
  • 7.87e3
  • 8.58e3
  • 1.02e4
  • 1.23e4
95.57
  • 95.57
  • 92.83
  • 86.65
  • 85.48
  • 85.27
  • 85.11
  • 84.64
  • 81.80
  • 81.08
  • 79.59
  • 79.37
  • 77.52
  • 73.21
  • 67.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
2.82e3
  • 2.82e3
  • 3.37e3
  • 3.69e3
  • 4.12e3
  • 6.55e3
92.60
  • 92.60
  • 91.17
  • 90.33
  • 89.19
  • 82.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000107cleavage stage
  • UBERON:0000109gastrula stage
  • UBERON:00072322 cell stage
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
4.06e3
  • 4.06e3
  • 6.91e3
  • 8.15e3
  • 8.84e3
  • 9.06e3
  • 9.35e3
  • 9.66e3
  • 9.88e3
  • 1.01e4
  • 1.03e4
  • 1.03e4
  • 1.49e4
89.35
  • 89.35
  • 81.88
  • 78.63
  • 76.82
  • 76.25
  • 75.48
  • 74.68
  • 74.09
  • 73.52
  • 73.04
  • 72.89
  • 60.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
  • 1.04e4
86.89
  • 86.89
  • 72.71
AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.00e4
  • 1.00e4
73.66
  • 73.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : WBGene00004296.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta16 genesCompare expression

Paralogy information comes from OMA : WBGene00004296.

Cross-references

EnsemblWBGene00004296 (rad-50)
WormBaseWBGene00004296
EMBLZ75312, Z78200
Uniprot/SPTREMBLA5JYU5, A5JYU5_CAEEL
Uniprot/SWISSPROTO44199, RAD50_CAEEL

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