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C. elegans Gene: rpl-28 - WBGene00004442 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00004442
Namerpl-28
DescriptionCaenorhabditis elegans Protein RPL-28 (rpl-28) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_073779]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)31 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000106zygote stage
  • UBERON:0000109gastrula stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:00072322 cell stage
  • UBERON:0000107cleavage stage
  • UBERON:0000068embryo stage
66.1
  • 66.1
  • 91.0
  • 101
  • 113
  • 129
  • 158
  • 168
  • 169
  • 180
  • 195
  • 571
  • 740
99.83
  • 99.83
  • 99.76
  • 99.74
  • 99.71
  • 99.67
  • 99.59
  • 99.56
  • 99.56
  • 99.53
  • 99.49
  • 98.50
  • 98.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
92.2
  • 92.2
99.76
  • 99.76
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
117
  • 117
  • 134
  • 142
  • 173
  • 173
  • 191
  • 196
  • 202
  • 206
  • 208
  • 213
  • 218
  • 239
  • 351
99.70
  • 99.70
  • 99.65
  • 99.63
  • 99.55
  • 99.55
  • 99.50
  • 99.49
  • 99.47
  • 99.46
  • 99.46
  • 99.44
  • 99.43
  • 99.38
  • 99.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
131
  • 131
  • 141
  • 142
  • 152
  • 189
99.66
  • 99.66
  • 99.63
  • 99.63
  • 99.60
  • 99.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
142
  • 142
  • 212
99.63
  • 99.63
  • 99.45
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria22 species31 genesCompare expression

Orthology information comes from OMA : WBGene00004442.

Cross-references

EnsemblWBGene00004442 (rpl-28)
WormBaseWBGene00004442
EMBLZ75547
Uniprot/SWISSPROTQ21930, RL28_CAEEL

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