C. elegans Gene: slt-1 - WBGene00004854 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00004854
Nameslt-1
DescriptionCaenorhabditis elegans Protein SLT-1 (slt-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_078036]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000107cleavage stage
  • UBERON:00072322 cell stage
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:000000928-cell embryo Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • WBls:0000038L4 larva Ce (C elegans)
4.16e3
  • 4.16e3
  • 6.89e3
  • 8.52e3
  • 8.52e3
  • 9.32e3
  • 9.61e3
  • 9.79e3
  • 1.57e4
  • 1.62e4
  • 1.68e4
  • 1.85e4
89.08844
  • 89.08844
  • 81.95221
  • 77.67523
  • 77.65864
  • 75.56397
  • 74.80848
  • 74.34755
  • 58.84982
  • 57.62692
  • 56.03788
  • 51.42157
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
6.85e3
  • 6.85e3
82.04449
  • 82.04449
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000068embryo stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
7.72e3
  • 7.72e3
  • 1.18e4
  • 1.40e4
  • 1.40e4
  • 1.40e4
  • 1.68e4
  • 1.85e4
  • 1.94e4
  • 2.12e4
  • 2.15e4
  • 2.21e4
  • 2.25e4
  • 2.25e4
79.77334
  • 79.77334
  • 69.02054
  • 63.36221
  • 63.26432
  • 63.19999
  • 55.85264
  • 51.53212
  • 49.14774
  • 44.30945
  • 43.62212
  • 41.96972
  • 41.13836
  • 41.03719
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
1.25e4
  • 1.25e4
  • 1.27e4
  • 1.42e4
  • 1.47e4
  • 1.52e4
67.32882
  • 67.32882
  • 66.67735
  • 62.79453
  • 61.46946
  • 60.12835
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLAL022270, Z69792
EnsemblWBGene00004854 (slt-1)
Uniprot/SWISSPROTG5EFX6, SLIT1_CAEEL
WormBaseWBGene00004854

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