C. elegans Gene: spk-1 - WBGene00004980 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00004980
Namespk-1
DescriptionCaenorhabditis elegans Protein SPK-1, isoform b [Source:RefSeq mRNA;Acc:NM_001025962]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q9xvx9, q9xvy0

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000107cleavage stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
838
  • 838
  • 1.14e3
  • 1.56e3
  • 1.60e3
  • 1.82e3
  • 2.04e3
  • 2.22e3
  • 2.30e3
  • 2.35e3
  • 2.35e3
  • 2.98e3
  • 3.07e3
97.81
  • 97.81
  • 97.01
  • 95.93
  • 95.82
  • 95.24
  • 94.66
  • 94.17
  • 93.98
  • 93.85
  • 93.85
  • 92.18
  • 91.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
943
  • 943
  • 1.47e3
97.53
  • 97.53
  • 96.14
AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
951
  • 951
  • 1.06e3
  • 1.13e3
  • 1.38e3
  • 1.53e3
97.51
  • 97.51
  • 97.24
  • 97.03
  • 96.37
  • 95.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000068embryo stage
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
1.11e3
  • 1.11e3
  • 1.18e3
  • 1.45e3
  • 1.45e3
  • 1.48e3
  • 1.52e3
  • 1.70e3
  • 1.75e3
  • 1.92e3
  • 2.16e3
  • 2.26e3
  • 2.29e3
  • 2.50e3
  • 2.59e3
97.10
  • 97.10
  • 96.90
  • 96.19
  • 96.19
  • 96.12
  • 96.01
  • 95.54
  • 95.41
  • 94.96
  • 94.35
  • 94.08
  • 93.99
  • 93.44
  • 93.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.40e3
  • 1.40e3
96.33
  • 96.33
AEIR
  • AEIR
UBERON:0000991gonad
  • WBls:0000057adult hermaphrodite Ce (C elegans)
9.54e3
  • 9.54e3
75.00
  • 75.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EnsemblWBGene00004980 (spk-1)
WormBaseWBGene00004980
EMBLAF241656, Z19152
Uniprot/SPTREMBLM1ZJY1, M1ZJY1_CAEEL
Uniprot/SWISSPROTQ03563, SPK1_CAEEL

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