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C. elegans Gene: unc-54 - WBGene00006789 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00006789
Nameunc-54
DescriptionCaenorhabditis elegans Protein UNC-54 (unc-54) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_061195]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)o02244
Orthologs(s)178 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
207
  • 207
  • 228
  • 299
  • 338
  • 448
  • 785
  • 1.04e3
  • 1.73e3
  • 2.71e3
  • 2.92e3
  • 5.06e3
  • 7.18e3
  • 8.99e3
  • 9.28e3
99.46
  • 99.46
  • 99.40
  • 99.22
  • 99.12
  • 98.83
  • 97.94
  • 97.27
  • 95.47
  • 92.91
  • 92.35
  • 86.74
  • 81.19
  • 76.43
  • 75.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
243
  • 243
  • 246
  • 250
  • 558
  • 726
  • 1.15e3
  • 1.36e3
  • 6.33e3
  • 6.48e3
  • 8.56e3
  • 1.04e4
  • 1.65e4
99.36
  • 99.36
  • 99.36
  • 99.35
  • 98.54
  • 98.10
  • 96.99
  • 96.43
  • 83.40
  • 83.03
  • 77.55
  • 72.65
  • 56.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
491
  • 491
  • 627
  • 3.50e3
  • 5.28e3
  • 7.70e3
98.71
  • 98.71
  • 98.36
  • 90.84
  • 86.16
  • 79.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
3.40e3
  • 3.40e3
91.09
  • 91.09
AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
7.46e3
  • 7.46e3
  • 1.11e4
80.46
  • 80.46
  • 71.00
AEIR
  • AEIR
  • AEIR
UBERON:0004462musculature of body wall
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
9.54e3
  • 9.54e3
  • 1.27e4
75.00
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0003101male organism
  • UBERON:0000104life cycle
1.91e4
  • 1.91e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa5 species5 genesCompare expression
Bilateria25 species178 genesCompare expression

Orthology information comes from OMA : WBGene00006789.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Ecdysozoa2 genesCompare expression
Bilateria4 genesCompare expression
Eukaryota6 genesCompare expression

Paralogy information comes from OMA : WBGene00006789.

Cross-references

EnsemblWBGene00006789 (unc-54)
WormBaseWBGene00006789
EMBLJ01050, V01494, Z81499, Z83107
Uniprot/SWISSPROTMYO4_CAEEL, P02566

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