C. elegans Gene: vab-1 - WBGene00006868 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00006868
Namevab-1
DescriptionCaenorhabditis elegans Protein VAB-1, isoform b (vab-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_062405]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q21477
Orthologs(s)243 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.57e3
  • 1.57e3
95.89
  • 95.89
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000107cleavage stage
  • UBERON:0000106zygote stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:00072322 cell stage
  • UBERON:0000109gastrula stage
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000024L1 larva Ce (C elegans)
1.83e3
  • 1.83e3
  • 2.37e3
  • 3.17e3
  • 4.41e3
  • 4.72e3
  • 4.77e3
  • 5.42e3
  • 5.53e3
  • 5.95e3
  • 8.69e3
  • 9.30e3
  • 1.38e4
95.20
  • 95.20
  • 93.80
  • 91.68
  • 88.44
  • 87.63
  • 87.51
  • 85.78
  • 85.50
  • 84.41
  • 77.23
  • 75.63
  • 63.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
  • 2.90e3
  • 3.04e3
  • 3.85e3
  • 7.30e3
93.78
  • 93.78
  • 92.41
  • 92.03
  • 89.92
  • 80.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
3.16e3
  • 3.16e3
  • 5.48e3
  • 5.98e3
  • 6.21e3
  • 7.25e3
  • 8.07e3
  • 8.13e3
  • 9.12e3
  • 9.37e3
  • 9.88e3
  • 1.05e4
  • 1.10e4
  • 1.31e4
  • 1.45e4
91.72
  • 91.72
  • 85.64
  • 84.34
  • 83.72
  • 81.00
  • 78.85
  • 78.70
  • 76.10
  • 75.44
  • 74.10
  • 72.55
  • 71.21
  • 65.55
  • 62.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
  • 7.43e3
87.61
  • 87.61
  • 80.53
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa2 species2 genesCompare expression
Bilateria22 species243 genesCompare expression

Orthology information comes from OMA : WBGene00006868.

Cross-references

EnsemblWBGene00006868 (vab-1)
WormBaseWBGene00006868
EMBLAF040269, FO081295
Uniprot/SWISSPROTO61460, VAB1_CAEEL

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