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C. elegans Gene: mdt-20 - WBGene00007020 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00007020
Namemdt-20
DescriptionCaenorhabditis elegans Protein MDT-20 (mdt-20) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_067649]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:0000107cleavage stage
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
793
  • 793
  • 828
  • 975
  • 1.12e3
  • 1.44e3
  • 1.82e3
  • 2.10e3
  • 2.34e3
  • 4.44e3
  • 4.76e3
  • 5.34e3
  • 6.40e3
97.92
  • 97.92
  • 97.83
  • 97.45
  • 97.07
  • 96.22
  • 95.22
  • 94.49
  • 93.87
  • 88.37
  • 87.53
  • 86.01
  • 83.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
  • 2.75e3
  • 2.81e3
  • 3.07e3
  • 3.65e3
94.17
  • 94.17
  • 92.80
  • 92.63
  • 91.97
  • 90.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
3.86e3
  • 3.86e3
89.89
  • 89.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : WBGene00007020.

Cross-references

EnsemblWBGene00007020 (mdt-20)
WormBaseWBGene00007020
EMBLFO080911
Uniprot/SPTREMBLU4PEP3, U4PEP3_CAEEL
Uniprot/SWISSPROTMED20_CAEEL, Q9N5A1

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