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C. elegans Gene: B0250.5 - WBGene00007122 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00007122
NameB0250.5
DescriptionCaenorhabditis elegans Protein B0250.5 (B0250.5) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_075542]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)27 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
  • UBERON:0000106zygote stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000107cleavage stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000024L1 larva Ce (C elegans)
1.13e3
  • 1.13e3
  • 1.21e3
  • 1.37e3
  • 1.57e3
  • 1.82e3
  • 2.66e3
  • 2.88e3
  • 3.06e3
  • 4.45e3
  • 5.56e3
  • 7.18e3
  • 1.22e4
97.04
  • 97.04
  • 96.82
  • 96.41
  • 95.88
  • 95.24
  • 93.04
  • 92.46
  • 91.99
  • 88.33
  • 85.43
  • 81.18
  • 68.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
1.78e3
  • 1.78e3
  • 1.79e3
  • 3.37e3
  • 3.72e3
  • 4.58e3
95.34
  • 95.34
  • 95.32
  • 91.16
  • 90.24
  • 88.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
1.97e3
  • 1.97e3
  • 2.20e3
  • 2.52e3
  • 2.55e3
  • 2.63e3
  • 3.46e3
  • 3.62e3
  • 3.77e3
  • 3.85e3
  • 4.10e3
  • 4.56e3
  • 6.05e3
  • 6.58e3
  • 7.16e3
94.83
  • 94.83
  • 94.23
  • 93.38
  • 93.31
  • 93.11
  • 90.94
  • 90.50
  • 90.12
  • 89.90
  • 89.25
  • 88.04
  • 84.14
  • 82.75
  • 81.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
2.50e3
  • 2.50e3
93.46
  • 93.46
AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
  • 3.61e3
91.21
  • 91.21
  • 90.54
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa5 species5 genesCompare expression
Bilateria24 species27 genesCompare expression

Orthology information comes from OMA : WBGene00007122.

Cross-references

EnsemblWBGene00007122 (B0250.5)
WormBaseWBGene00007122
EMBLAL031630, Z81453
Uniprot/SWISSPROT3HIDH_CAEEL, Q9XTI0

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