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C. elegans Gene: cyp-35C1 - WBGene00007362 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00007362
Namecyp-35C1
DescriptionCaenorhabditis elegans Protein CYP-35C1 (cyp-35C1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_171550]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)46 orthologs
Paralog(s)18 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
  • 4.37e3
  • 6.19e3
  • 7.81e3
  • 8.80e3
89.40
  • 89.40
  • 88.56
  • 83.78
  • 79.53
  • 76.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
4.10e3
  • 4.10e3
  • 5.57e3
  • 7.73e3
  • 8.79e3
  • 9.07e3
  • 1.71e4
  • 1.99e4
  • 2.13e4
89.26
  • 89.26
  • 85.41
  • 79.75
  • 76.97
  • 76.23
  • 55.14
  • 47.85
  • 44.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
4.26e3
  • 4.26e3
  • 5.27e3
  • 5.68e3
  • 6.58e3
  • 6.72e3
  • 7.10e3
  • 7.15e3
  • 7.62e3
  • 8.01e3
  • 8.84e3
  • 8.90e3
  • 9.39e3
  • 1.01e4
  • 1.25e4
88.84
  • 88.84
  • 86.19
  • 85.10
  • 82.75
  • 82.40
  • 81.38
  • 81.25
  • 80.04
  • 79.01
  • 76.81
  • 76.66
  • 75.39
  • 73.64
  • 67.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
7.16e3
  • 7.16e3
  • 1.91e4
81.23
  • 81.23
  • 49.88
AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
9.87e3
  • 9.87e3
74.14
  • 74.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Orthology information comes from OMA : WBGene00007362.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria14 genesCompare expression
Eukaryota18 genesCompare expression

Paralogy information comes from OMA : WBGene00007362.

Cross-references

EnsemblWBGene00007362 (cyp-35C1)
WormBaseWBGene00007362
EMBLZ77652, Z81127
Uniprot/SPTREMBLG5ECD0, G5ECD0_CAEEL

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