C. elegans Gene: sphk-1 - WBGene00007918 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00007918
Namesphk-1
DescriptionCaenorhabditis elegans Protein SPHK-1, isoform a [Source:RefSeq mRNA;Acc:NM_001026846]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)d2y8w1, h9g2q9, q7jm91

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
4.20e3
  • 4.20e3
89.04197
  • 89.04197
AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
5.80e3
  • 5.80e3
  • 6.62e3
  • 6.70e3
  • 6.85e3
  • 7.48e3
84.86179
  • 84.86179
  • 82.70036
  • 82.50058
  • 82.10996
  • 80.46654
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
6.16e3
  • 6.16e3
  • 6.47e3
83.91463
  • 83.91463
  • 83.09777
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000106zygote stage
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:00072322 cell stage
  • UBERON:0000107cleavage stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
6.26e3
  • 6.26e3
  • 6.62e3
  • 6.72e3
  • 6.96e3
  • 6.96e3
  • 8.08e3
  • 8.19e3
  • 8.82e3
  • 9.22e3
  • 9.64e3
  • 9.91e3
  • 1.39e4
  • 1.80e4
83.66142
  • 83.66142
  • 82.69602
  • 82.44418
  • 81.82222
  • 81.80916
  • 78.89645
  • 78.60101
  • 76.96182
  • 75.90987
  • 74.80765
  • 74.12556
  • 63.66884
  • 53.02543
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
7.46e3
  • 7.46e3
  • 8.37e3
  • 8.55e3
  • 9.10e3
  • 9.19e3
  • 9.29e3
  • 9.46e3
  • 9.62e3
  • 9.64e3
  • 9.68e3
  • 1.01e4
  • 1.06e4
  • 1.20e4
  • 1.62e4
80.52399
  • 80.52399
  • 78.13162
  • 77.67359
  • 76.21924
  • 75.99357
  • 75.72775
  • 75.29397
  • 74.86562
  • 74.82743
  • 74.72412
  • 73.67895
  • 72.30647
  • 68.66117
  • 57.61421
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLZ66494
EnsemblWBGene00007918 (sphk-1)
Uniprot/SWISSPROTQ18425, SPHK1_CAEEL
WormBaseWBGene00007918

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