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C. elegans Gene: spin-3 - WBGene00008598 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00008598
Namespin-3
DescriptionCaenorhabditis elegans Protein F09A5.1 (F09A5.1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_077780]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)18 orthologs
Paralog(s)25 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
9.97e3
  • 9.97e3
  • 1.21e4
  • 1.23e4
  • 1.29e4
  • 1.57e4
  • 2.20e4
  • 2.66e4
  • 2.67e4
73.85
  • 73.85
  • 68.27
  • 67.77
  • 66.17
  • 58.85
  • 42.44
  • 30.22
  • 29.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
1.02e4
  • 1.02e4
  • 1.25e4
  • 1.28e4
  • 1.38e4
  • 1.80e4
73.33
  • 73.33
  • 67.10
  • 66.48
  • 63.90
  • 52.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
1.39e4
  • 1.39e4
  • 1.61e4
  • 1.62e4
  • 1.71e4
  • 1.74e4
  • 1.82e4
  • 1.82e4
  • 1.84e4
  • 1.99e4
  • 2.04e4
  • 2.16e4
  • 2.25e4
  • 2.29e4
63.45
  • 63.45
  • 57.82
  • 57.41
  • 55.07
  • 54.31
  • 52.38
  • 52.16
  • 51.83
  • 47.73
  • 46.42
  • 43.39
  • 41.14
  • 39.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Ecdysozoa2 genesCompare expression
Eukaryota25 genesCompare expression

Paralogy information comes from OMA : WBGene00008598.

Cross-references

EnsemblWBGene00008598 (spin-3)
WormBaseWBGene00008598
EMBLZ69788
Uniprot/SPTREMBLQ19235, Q19235_CAEEL

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