C. elegans Gene: skpo-1 - WBGene00009897 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00009897
Nameskpo-1
DescriptionCaenorhabditis elegans Protein F49E12.1 (F49E12.1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_063367]
OrganismCaenorhabditis elegans (nematode)
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
735
  • 735
  • 831
  • 993
  • 1.16e3
  • 9.01e3
98.07
  • 98.07
  • 97.82
  • 97.40
  • 96.96
  • 76.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000027L2 larva Ce (C elegans)
823
  • 823
  • 1.13e3
  • 1.21e3
  • 1.39e3
  • 2.04e3
  • 2.99e3
  • 4.73e3
  • 1.24e4
  • 1.28e4
  • 1.69e4
  • 2.10e4
  • 2.11e4
  • 2.23e4
  • 2.29e4
97.84
  • 97.84
  • 97.04
  • 96.84
  • 96.35
  • 94.65
  • 92.17
  • 87.60
  • 67.49
  • 66.43
  • 55.78
  • 44.87
  • 44.79
  • 41.59
  • 39.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
  • 3.67e3
92.38
  • 92.38
  • 90.37
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
3.39e3
  • 3.39e3
  • 4.88e3
  • 1.59e4
  • 1.70e4
  • 1.71e4
  • 1.84e4
  • 2.30e4
  • 2.43e4
91.11
  • 91.11
  • 87.21
  • 58.25
  • 55.48
  • 55.06
  • 51.76
  • 39.67
  • 36.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.45e4
  • 1.45e4
61.96
  • 61.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : WBGene00009897.

Cross-references

EnsemblWBGene00009897 (skpo-1)
WormBaseWBGene00009897
EMBLZ66520
Uniprot/SPTREMBLQ20616, SKPO1_CAEEL

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