C. elegans Gene: F54D5.7 - WBGene00010052 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00010052
NameF54D5.7
DescriptionCaenorhabditis elegans Protein F54D5.7 (F54D5.7) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_064068]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
1.44e3
  • 1.44e3
  • 2.75e3
  • 2.75e3
  • 3.09e3
  • 3.20e3
  • 3.25e3
  • 4.11e3
  • 4.15e3
  • 4.43e3
  • 4.54e3
  • 4.56e3
  • 4.56e3
  • 4.76e3
  • 5.45e3
96.24
  • 96.24
  • 92.79
  • 92.78
  • 91.89
  • 91.61
  • 91.47
  • 89.22
  • 89.12
  • 88.40
  • 88.10
  • 88.05
  • 88.04
  • 87.52
  • 85.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000106zygote stage
  • UBERON:0000107cleavage stage
  • UBERON:00072322 cell stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
1.47e3
  • 1.47e3
  • 2.38e3
  • 2.67e3
  • 4.12e3
  • 4.18e3
  • 4.61e3
  • 4.76e3
  • 4.91e3
  • 5.37e3
  • 6.00e3
  • 7.42e3
  • 1.18e4
96.16
  • 96.16
  • 93.75
  • 93.01
  • 89.21
  • 89.05
  • 87.91
  • 87.52
  • 87.12
  • 85.94
  • 84.29
  • 80.55
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
2.07e3
  • 2.07e3
  • 2.36e3
  • 3.24e3
  • 3.56e3
  • 3.76e3
94.58
  • 94.58
  • 93.82
  • 91.52
  • 90.66
  • 90.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
  • 5.12e3
88.77
  • 88.77
  • 86.58
AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
4.29e3
  • 4.29e3
88.75
  • 88.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLZ66513
EnsemblWBGene00010052 (F54D5.7)
Uniprot/SWISSPROTGCDH_CAEEL, Q20772
WormBaseWBGene00010052

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