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C. elegans Gene: gpdh-2 - WBGene00010778 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00010778
Namegpdh-2
DescriptionCaenorhabditis elegans Protein GPDH-2, isoform a [Source:RefSeq mRNA;Acc:NM_066787]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q8i4h2
Orthologs(s)48 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
446
  • 446
  • 630
  • 824
  • 912
  • 961
  • 996
  • 998
  • 1.11e3
  • 1.11e3
  • 1.18e3
  • 1.19e3
  • 1.30e3
  • 1.61e3
  • 2.11e3
98.83
  • 98.83
  • 98.35
  • 97.84
  • 97.61
  • 97.48
  • 97.39
  • 97.39
  • 97.10
  • 97.09
  • 96.92
  • 96.90
  • 96.60
  • 95.77
  • 94.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
631
  • 631
  • 771
98.35
  • 98.35
  • 97.98
AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
947
  • 947
  • 988
  • 1.05e3
  • 1.16e3
  • 1.46e3
97.52
  • 97.52
  • 97.41
  • 97.24
  • 96.96
  • 96.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000109gastrula stage
  • UBERON:00072322 cell stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000106zygote stage
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
1.16e3
  • 1.16e3
  • 1.27e3
  • 1.34e3
  • 1.36e3
  • 1.49e3
  • 1.57e3
  • 1.60e3
  • 1.80e3
  • 1.86e3
  • 2.07e3
  • 2.36e3
  • 2.95e3
96.95
  • 96.95
  • 96.66
  • 96.48
  • 96.45
  • 96.10
  • 95.90
  • 95.82
  • 95.29
  • 95.13
  • 94.59
  • 93.81
  • 92.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
2.69e3
  • 2.69e3
92.95
  • 92.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species7 genesCompare expression
Bilateria25 species48 genesCompare expression

Orthology information comes from OMA : WBGene00010778.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : WBGene00010778.

Cross-references

EnsemblWBGene00010778 (gpdh-2)
WormBaseWBGene00010778
EMBLZ22180
Uniprot/SPTREMBLA7LPE5, A7LPE5_CAEEL, A7LPE6, A7LPE6_CAEEL, Q7JMU1, Q7JMU1_CAEEL
Uniprot/SWISSPROTGPDH2_CAEEL, P34517

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