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C. elegans Gene: svop-1 - WBGene00014021 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00014021
Namesvop-1
DescriptionCaenorhabditis elegans Protein SVOP-1 (svop-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_066559]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q21101
Orthologs(s)23 orthologs
Paralog(s)26 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
2.85e3
  • 2.85e3
92.53
  • 92.53
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:00072322 cell stage
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
7.51e3
  • 7.51e3
  • 8.27e3
  • 8.47e3
  • 1.07e4
  • 1.09e4
  • 1.41e4
  • 1.60e4
  • 1.70e4
  • 1.83e4
  • 2.20e4
  • 2.75e4
80.30
  • 80.30
  • 78.34
  • 77.78
  • 71.88
  • 71.42
  • 63.13
  • 58.12
  • 55.32
  • 51.97
  • 42.30
  • 27.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
  • 1.11e4
  • 1.13e4
  • 1.15e4
  • 1.20e4
77.05
  • 77.05
  • 70.91
  • 70.47
  • 69.97
  • 68.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
9.34e3
  • 9.34e3
  • 1.13e4
  • 1.18e4
  • 1.31e4
  • 1.34e4
  • 1.36e4
  • 1.43e4
  • 1.50e4
  • 1.51e4
  • 1.52e4
  • 1.67e4
  • 1.76e4
  • 1.89e4
75.52
  • 75.52
  • 70.43
  • 69.02
  • 65.78
  • 64.97
  • 64.48
  • 62.64
  • 60.77
  • 60.29
  • 60.28
  • 56.32
  • 53.95
  • 50.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota26 genesCompare expression

Paralogy information comes from OMA : WBGene00014021.

Cross-references

EnsemblWBGene00014021 (svop-1)
WormBaseWBGene00014021
EMBLZ11115, Z22175
Uniprot/SWISSPROTP30638, SVOP_CAEEL

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