C. elegans Gene: aff-1 - WBGene00016625 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00016625
Nameaff-1
DescriptionCaenorhabditis elegans Protein AFF-1 (aff-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_063001]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000104life cycle
7.66e3
  • 7.66e3
  • 1.07e4
  • 1.08e4
  • 1.46e4
  • 2.05e4
  • 2.09e4
  • 2.33e4
  • 2.35e4
79.90969
  • 79.90969
  • 71.86242
  • 71.74240
  • 61.72712
  • 46.29239
  • 45.17304
  • 39.04046
  • 38.50227
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
8.10e3
  • 8.10e3
78.77343
  • 78.77343
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000068embryo stage
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
1.16e4
  • 1.16e4
  • 1.65e4
  • 1.70e4
  • 1.81e4
  • 1.82e4
  • 1.94e4
  • 1.94e4
  • 2.09e4
  • 2.15e4
  • 2.21e4
  • 2.25e4
  • 2.25e4
69.71773
  • 69.71773
  • 56.73814
  • 55.33165
  • 52.67003
  • 52.21555
  • 49.14394
  • 49.12472
  • 45.17946
  • 43.73260
  • 41.96972
  • 41.13836
  • 41.03719
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
  • 1.48e4
  • 1.48e4
  • 1.51e4
  • 1.69e4
63.28954
  • 63.28954
  • 61.26307
  • 61.08708
  • 60.49931
  • 55.68467
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLEF205023, FO080141
EnsemblWBGene00016625 (aff-1)
Uniprot/SPTREMBLAFF1_CAEEL, G5EGL9
WormBaseWBGene00016625

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