C. elegans Gene: hmgs-1 - WBGene00017769 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00017769
Namehmgs-1
DescriptionCaenorhabditis elegans Protein HMGS-1 (hmgs-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_072095]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q22962

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • UBERON:0000106zygote stage
  • UBERON:0000109gastrula stage
  • UBERON:00072322 cell stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • WBls:0000024L1 larva Ce (C elegans)
3.55e3
  • 3.55e3
  • 4.11e3
  • 4.34e3
  • 5.12e3
  • 5.41e3
  • 5.74e3
  • 5.75e3
  • 5.76e3
  • 5.77e3
  • 6.02e3
  • 8.90e3
  • 9.47e3
  • 1.21e4
90.73571
  • 90.73571
  • 89.27568
  • 88.66854
  • 86.61616
  • 85.86303
  • 84.99607
  • 84.97551
  • 84.96506
  • 84.92326
  • 84.26577
  • 76.76243
  • 75.25740
  • 68.36753
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
4.11e3
  • 4.11e3
89.26790
  • 89.26790
AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
5.62e3
  • 5.62e3
  • 6.71e3
  • 6.76e3
  • 6.79e3
  • 7.49e3
85.31417
  • 85.31417
  • 82.46706
  • 82.33861
  • 82.25587
  • 80.43979
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
6.34e3
  • 6.34e3
  • 6.57e3
83.44827
  • 83.44827
  • 82.83151
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
6.62e3
  • 6.62e3
  • 7.29e3
  • 7.46e3
  • 7.46e3
  • 7.48e3
  • 7.52e3
  • 7.66e3
  • 7.94e3
  • 8.09e3
  • 8.14e3
  • 8.38e3
  • 8.54e3
  • 8.74e3
  • 9.36e3
82.71799
  • 82.71799
  • 80.96060
  • 80.52417
  • 80.50675
  • 80.47304
  • 80.35825
  • 79.98646
  • 79.25177
  • 78.86754
  • 78.74600
  • 78.09964
  • 77.67939
  • 77.16285
  • 75.54791
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLFO080538, U12787
EnsemblWBGene00017769 (hmgs-1)
Uniprot/SWISSPROTHMCS_CAEEL, P54871
WormBaseWBGene00017769

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