C. elegans Gene: stn-2 - WBGene00017866 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00017866
Namestn-2
DescriptionCaenorhabditis elegans Protein STN-2, isoform b (stn-2) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_001029439]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)39 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
5.01e3
  • 5.01e3
  • 7.38e3
  • 7.39e3
  • 8.87e3
  • 1.17e4
  • 1.32e4
  • 1.43e4
  • 1.73e4
  • 1.87e4
  • 2.75e4
86.86
  • 86.86
  • 80.66
  • 80.64
  • 76.74
  • 69.30
  • 65.33
  • 62.47
  • 54.74
  • 51.09
  • 27.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
6.19e3
  • 6.19e3
83.78
  • 83.78
AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
9.94e3
  • 9.94e3
  • 1.13e4
  • 1.27e4
  • 1.27e4
  • 1.36e4
73.96
  • 73.96
  • 70.26
  • 66.82
  • 66.59
  • 64.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000068embryo stage
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 1.12e4
  • 1.17e4
  • 1.19e4
  • 1.19e4
  • 1.49e4
  • 1.50e4
  • 1.51e4
  • 1.59e4
  • 1.63e4
  • 1.66e4
  • 1.81e4
  • 2.14e4
72.17
  • 72.17
  • 70.66
  • 69.28
  • 68.87
  • 68.77
  • 60.87
  • 60.59
  • 60.37
  • 58.42
  • 57.28
  • 56.61
  • 52.59
  • 43.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria25 species39 genesCompare expression

Orthology information comes from OMA : WBGene00017866.

Cross-references

EnsemblWBGene00017866 (stn-2)
WormBaseWBGene00017866
EMBLFO080935
Uniprot/SPTREMBLH2KZE9, H2KZE9_CAEEL, Q5WRR6, Q5WRR6_CAEEL

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