C. elegans Gene: vps-60 - WBGene00018290 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00018290
Namevps-60
DescriptionCaenorhabditis elegans Protein F41E6.9 (F41E6.9) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_072818]
OrganismCaenorhabditis elegans (nematode)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
218
  • 218
  • 288
  • 464
  • 599
  • 1.08e3
  • 1.21e3
  • 1.30e3
  • 1.40e3
  • 1.50e3
  • 1.62e3
  • 2.04e3
  • 2.11e3
  • 3.17e3
  • 3.51e3
99.43311
  • 99.43311
  • 99.25060
  • 98.79028
  • 98.43728
  • 97.18255
  • 96.84682
  • 96.61735
  • 96.34563
  • 96.08091
  • 95.75994
  • 94.66680
  • 94.48421
  • 91.70978
  • 90.83065
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
538
  • 538
  • 610
  • 657
  • 774
  • 1.26e3
98.59800
  • 98.59800
  • 98.40941
  • 98.28570
  • 97.98106
  • 96.71387
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
550
  • 550
  • 2.34e3
98.56639
  • 98.56639
  • 93.89852
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000068embryo stage
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • UBERON:0000107cleavage stage
  • UBERON:0000104life cycle
  • UBERON:00072322 cell stage
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000106zygote stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
978
  • 978
  • 1.09e3
  • 1.34e3
  • 1.37e3
  • 1.61e3
  • 1.71e3
  • 1.77e3
  • 2.09e3
  • 2.09e3
  • 2.10e3
  • 2.11e3
  • 2.24e3
  • 2.51e3
97.44733
  • 97.44733
  • 97.16021
  • 96.49638
  • 96.43548
  • 95.80767
  • 95.52351
  • 95.38222
  • 94.54771
  • 94.53726
  • 94.51114
  • 94.47754
  • 94.14539
  • 93.43241
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
1.82e3
  • 1.82e3
95.24128
  • 95.24128
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLFO080488
EnsemblWBGene00018290 (vps-60)
Uniprot/SPTREMBLO16458, O16458_CAEEL
WormBaseWBGene00018290

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